4.6 Article

PEPstrMOD: structure prediction of peptides containing natural, non-natural and modified residues

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

SATPdb: a database of structurally annotated therapeutic peptides

Sandeep Singh et al.

NUCLEIC ACIDS RESEARCH (2016)

Article Biochemistry & Molecular Biology

CancerPPD: a database of anticancer peptides and proteins

Atul Tyagi et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides

Ravi Kumar et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

Tumor Homing Peptides as Molecular Probes for Cancer Therapeutics, Diagnostics and Theranostics

A. Gautam et al.

CURRENT MEDICINAL CHEMISTRY (2014)

Article Chemistry, Physical

Improved PEP-FOLD Approach for Peptide and Miniprotein Structure Prediction

Yimin Shen et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2014)

Article Medicine, Research & Experimental

Rational Design of Artificial β-Strand-Forming Antimicrobial Peptides with Biocompatible Properties

Karsten Rapsch et al.

MOLECULAR PHARMACEUTICS (2014)

Article Biochemistry & Molecular Biology

CAMP: Collection of sequences and structures of antimicrobial peptides

Faiza Hanif Waghu et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides

Ankur Gautam et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Identification of Urinary Peptide Biomarkers Associated with Rheumatoid Arthritis

Angelique Stalmach et al.

PLOS ONE (2014)

Article Mathematical & Computational Biology

ParaPep: a web resource for experimentally validated antiparasitic peptide sequences and their structures

D. Mehta et al.

Database-The Journal of Biological Databases and Curation (2014)

Review Biochemistry & Molecular Biology

The Future of Peptide-based Drugs

David J. Craik et al.

CHEMICAL BIOLOGY & DRUG DESIGN (2013)

Review Pharmacology & Pharmacy

Future directions for peptide therapeutics development

Allan A. Kaspar et al.

DRUG DISCOVERY TODAY (2013)

Article Chemistry, Physical

Forcefield_PTM: Ab Initio Charge and AMBER Forcefield Parameters for Frequently Occurring Post-Translational Modifications

George A. Khoury et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2013)

Article Biochemistry & Molecular Biology

The RCSB Protein Data Bank: new resources for research and education

Peter W. Rose et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

Quorumpeps database: chemical space, microbial origin and functionality of quorum sensing peptides

Evelien Wynendaele et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

SwissSidechain: a molecular and structural database of non-natural sidechains

David Gfeller et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemistry & Molecular Biology

Vienna-PTM web server: a toolkit for MD simulations of protein post-translational modifications

Christian Margreitter et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Biochemical Research Methods

A Systematic Framework for Molecular Dynamics Simulations of Protein Post-Translational Modifications

Drazen Petrov et al.

PLOS COMPUTATIONAL BIOLOGY (2013)

Review Anatomy & Morphology

Brainpeps: the blood-brain barrier peptide database

Sylvia Van Dorpe et al.

BRAIN STRUCTURE & FUNCTION (2012)

Editorial Material Chemistry, Medicinal

Therapeutic peptides FOREWORD

Fernando Albericio et al.

FUTURE MEDICINAL CHEMISTRY (2012)

Article Chemistry, Multidisciplinary

Expanding molecular modeling and design tools to non-natural sidechains

David Gfeller et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2012)

Article Biochemistry & Molecular Biology

In silico predictions of 3D structures of linear and cyclic peptides with natural and non-proteinogenic residues

Jerome Beaufays et al.

JOURNAL OF PEPTIDE SCIENCE (2012)

Article Medicine, Research & Experimental

Peptides as targeting probes against tumor vasculature for diagnosis and drug delivery

Zhi Jie Li et al.

JOURNAL OF TRANSLATIONAL MEDICINE (2012)

Article Biochemistry & Molecular Biology

PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides

Pierre Thevenet et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

TumorHoPe: A Database of Tumor Homing Peptides

Pallavi Kapoor et al.

PLOS ONE (2012)

Article Multidisciplinary Sciences

Novel African Trypanocidal Agents: Membrane Rigidifying Peptides

John M. Harrington et al.

PLOS ONE (2012)

Article Chemistry, Multidisciplinary

SwissParam: A Fast Force Field Generation Tool for Small Organic Molecules

Vincent Zoete et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2011)

Article Chemistry, Multidisciplinary

Open Babel: An open chemical toolbox

Noel M. O'Boyle et al.

JOURNAL OF CHEMINFORMATICS (2011)

Review Pharmacology & Pharmacy

Synthetic therapeutic peptides: science and market

Patrick Vlieghe et al.

DRUG DISCOVERY TODAY (2010)

Article Biochemical Research Methods

In silico designing and optimization of anti-breast cancer antibody mimetic oligopeptide targeting HER-2 in women

Bashir A. Akhoon et al.

JOURNAL OF MOLECULAR GRAPHICS & MODELLING (2010)

Article Biochemical Research Methods

Post-translational Modifications Differentially Affect IgG1 Conformation and Receptor Binding

Damian Houde et al.

MOLECULAR & CELLULAR PROTEOMICS (2010)

Article Biochemistry & Molecular Biology

Predicting the structures of 18 peptides using Geocore

Kohki Ishikawa et al.

PROTEIN SCIENCE (2010)

Review Biochemistry & Molecular Biology

Strategies to prolong the plasma residence time of peptide drugs

Lisa Pollaro et al.

MEDCHEMCOMM (2010)

Article Biochemistry & Molecular Biology

PEP-FOLD: an online resource for de novo peptide structure prediction

Julien Maupetit et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biophysics

Generalized Pattern Search Algorithm for Peptide Structure Prediction

Giuseppe Nicosia et al.

BIOPHYSICAL JOURNAL (2008)

Review Virology

Antivirals: current state of the art

Erik De Clercq

FUTURE VIROLOGY (2008)

Article Chemistry, Physical

GROMACS 4: Algorithms for highly efficient, load-balanced, and scalable molecular simulation

Berk Hess et al.

JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2008)

Article Biochemistry & Molecular Biology

Prediction of peptide structure: How far are we?

Annick Thomas et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)

Review Biochemistry & Molecular Biology

Strategies to improve plasma half life time of peptide and protein drugs

M. Werle et al.

AMINO ACIDS (2006)

Review Chemistry, Multidisciplinary

The Amber biomolecular simulation programs

DA Case et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2005)

Article Biochemical Research Methods

MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology

M Feig et al.

JOURNAL OF MOLECULAR GRAPHICS & MODELLING (2004)