4.5 Article

Genome streamlining via complete loss of introns has occurred multiple times in lichenized fungal mitochondria

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Absence of Complex I Implicates Rearrangement of the Respiratory Chain in European Mistletoe

Jennifer Senkler et al.

CURRENT BIOLOGY (2018)

Article Multidisciplinary Sciences

Genetics of alternative splicing evolution during sunflower domestication

Chris C. R. Smith et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Mycology

The lichens of the Alps – an annotated checklist

Pier Luigi Nimis et al.

MycoKeys (2018)

Article Genetics & Heredity

Genomic insights into the mitochondria of 11 eastern North American species of Cladonia

Laurel M. Brigham et al.

MITOCHONDRIAL DNA PART B-RESOURCES (2018)

Article Genetics & Heredity

The complete mitochondrial genomes of five lichenized fungi in the genus Usnea (Ascomycota: Parmeliaceae)

Erik R. Funk et al.

MITOCHONDRIAL DNA PART B-RESOURCES (2018)

Review Biotechnology & Applied Microbiology

Fungal mitochondrial genomes and genetic polymorphisms

Sarah Sandor et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2018)

Article Biochemistry & Molecular Biology

TimeTree: A Resource for Timelines, Timetrees, and Divergence Times

Sudhir Kumar et al.

MOLECULAR BIOLOGY AND EVOLUTION (2017)

Article Biochemistry & Molecular Biology

GeSeq - versatile and accurate annotation of organelle genomes

Michael Tillich et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biochemistry & Molecular Biology

Intron Invasions Trace Algal Speciation and Reveal Nearly Identical Arctic and Antarctic Micromonas Populations

Melinda P. Simmons et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Multidisciplinary Sciences

A Tale of Two Hyper-diversities: Diversification dynamics of the two largest families of lichenized fungi

Ekaphan Kraichak et al.

SCIENTIFIC REPORTS (2015)

Article Multidisciplinary Sciences

Lichen Symbiosis: Nature's High Yielding Machines for Induced Hydrogen Production

Aikaterini Papazi et al.

PLOS ONE (2015)

Review Microbiology

The Tiniest Tiny Genomes

Nancy A. Moran et al.

ANNUAL REVIEW OF MICROBIOLOGY, VOL 68 (2014)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Review Biochemistry & Molecular Biology

The impact of microbial symbionts on host plant utilization by herbivorous insects

Allison K. Hansen et al.

MOLECULAR ECOLOGY (2014)

Article Multidisciplinary Sciences

Evolutionary origin of insect-Wolbachia nutritional mutualism

Naruo Nikoh et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

Dating the Diversification of the Major Lineages of Ascomycota (Fungi)

Maria Prieto et al.

PLOS ONE (2013)

Article Biochemical Research Methods

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

Anton Bankevich et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

Article Ecology

phytools: an R package for phylogenetic comparative biology (and other things)

Liam J. Revell

METHODS IN ECOLOGY AND EVOLUTION (2012)

Article Biochemistry & Molecular Biology

Origins and Recombination of the Bacterial-Sized Multichromosomal Mitochondrial Genome of Cucumber

Andrew J. Alverson et al.

PLANT CELL (2011)

Article Biochemistry & Molecular Biology

Evaluation of Models of the Mechanisms Underlying Intron Loss and Gain in Aspergillus Fungi

Lei-Ying Zhang et al.

JOURNAL OF MOLECULAR EVOLUTION (2010)

Review Genetics & Heredity

Alternative splicing and evolution: diversification, exon definition and function

Hadas Keren et al.

NATURE REVIEWS GENETICS (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Towards barcode markers in Fungi: an intron map of Ascomycota mitochondria

Monica Santamaria et al.

BMC BIOINFORMATICS (2009)

Article Multidisciplinary Sciences

A novel route for ATP acquisition by the remnant mitochondria of Encephalitozoon cuniculi

Anastasios D. Tsaousis et al.

NATURE (2008)

Article Biochemical Research Methods

GEIGER: investigating evolutionary radiations

Luke J. Harmon et al.

BIOINFORMATICS (2008)

Article Computer Science, Interdisciplinary Applications

The ade4 package: Implementing the duality diagram for ecologists

Stephane Dray et al.

JOURNAL OF STATISTICAL SOFTWARE (2007)

Article Biochemistry & Molecular Biology

Dynamics of reductive genome evolution in mitochondria and obligate intracellular microbes

Amit N. Khachane et al.

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Review Genetics & Heredity

Mitochondrial introns: a critical view

B. Franz Lang et al.

TRENDS IN GENETICS (2007)

Article Genetics & Heredity

Comparative genomics of large mitochondria in placozoans

Ana Y. Signorovitch et al.

PLOS GENETICS (2007)

Review Multidisciplinary Sciences

Mutation pressure and the evolution of organelle genomic architecture

M Lynch et al.

SCIENCE (2006)

Review Genetics & Heredity

The evolution of spliceosomal introns: patterns, puzzles and progress

SW Roy et al.

NATURE REVIEWS GENETICS (2006)

Review Genetics & Heredity

The ecology of the genome - Mobile DNA elements and their hosts

JFY Brookfield

NATURE REVIEWS GENETICS (2005)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemical Research Methods

APE: Analyses of Phylogenetics and Evolution in R language

E Paradis et al.

BIOINFORMATICS (2004)

Article Biochemistry & Molecular Biology

Patterns of intron gain and loss in fungi

CB Nielsen et al.

PLOS BIOLOGY (2004)

Review Cell Biology

Homing endonuclease genes: the rise and fall and rise again of a selfish element

A Burt et al.

CURRENT OPINION IN GENETICS & DEVELOPMENT (2004)

Article Biochemical Research Methods

Automatic annotation of organellar genomes with DOGMA

SK Wyman et al.

BIOINFORMATICS (2004)

Review Microbiology

Regulation of transposition in bacteria

Z Nagy et al.

RESEARCH IN MICROBIOLOGY (2004)

Review Biochemistry & Molecular Biology

Evolution of mitochondrial gene content: gene loss and transfer to the nucleus

KL Adams et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2003)

Article Biochemical Research Methods

MrBayes 3: Bayesian phylogenetic inference under mixed models

F Ronquist et al.

BIOINFORMATICS (2003)

Review Environmental Sciences

Aspects of the biomonitoring studies using mosses and lichens as indicators of metal pollution

K Szczepaniak et al.

ENVIRONMENTAL RESEARCH (2003)

Review Genetics & Heredity

Plant transposable elements: Where genetics meets genomics

C Feschotte et al.

NATURE REVIEWS GENETICS (2002)

Review Biochemistry & Molecular Biology

Homing endonucleases: structural and functional insight into the catalysts of intron/intein mobility

BS Chevalier et al.

NUCLEIC ACIDS RESEARCH (2001)

Article Biochemical Research Methods

MRBAYES: Bayesian inference of phylogenetic trees

JP Huelsenbeck et al.

BIOINFORMATICS (2001)

Article Multidisciplinary Sciences

Mitochondrial genome variation and the origin of modern humans

M Ingman et al.

NATURE (2000)

Article Multidisciplinary Sciences

Dynamic evolution of plant mitochondrial genomes: Mobile genes and introns and highly variable mutation rates

JD Palmer et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)