相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies
Gabriela A. Merino et al.
BRIEFINGS IN BIOINFORMATICS (2019)
Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species
Colin Kern et al.
BMC GENOMICS (2018)
Cross-species inference of long non-coding RNAs greatly expands the ruminant transcriptome
Stephen J. Bush et al.
GENETICS SELECTION EVOLUTION (2018)
Mining long noncoding RNA in livestock
R. Weikard et al.
ANIMAL GENETICS (2017)
Simulation-based comprehensive benchmarking of RNA-seq aligners
Giacomo Baruzzo et al.
NATURE METHODS (2017)
A long noncoding RNA, lincRNA-Tnfaip3, acts as a coregulator of NF-κB to modulate inflammatory gene transcription in mouse macrophages
Shibin Ma et al.
FASEB JOURNAL (2017)
A Long Journey Ahead: Long Non-coding RNAs in Bacterial Infections
Jennifer Zur Bruegge et al.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2017)
Catalog of Differentially Expressed Long Non-Coding RNA following Activation of Human and Mouse Innate Immune Response
Benoit T. Roux et al.
FRONTIERS IN IMMUNOLOGY (2017)
Pathogenesis, Molecular Genetics, and Genomics of Mycobacterium avium subsp. paratuberculosis, the Etiologic Agent of Johne's Disease
Govardhan Rathnaiah et al.
FRONTIERS IN VETERINARY SCIENCE (2017)
Empirical assessment of analysis workflows for differential expression analysis of human samples using RNA-Seq
Claire R. Williams et al.
BMC BIOINFORMATICS (2017)
Local regulation of gene expression by lncRNA promoters, transcription and splicing
Jesse M. Engreitz et al.
NATURE (2016)
SinEx DB: a database for single exon coding sequences in mammalian genomes
Roddy Jorquera et al.
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2016)
Down regulated IncRNA MEG3 eliminates mycobacteria in macrophages via autophagy
Kamlesh Pawar et al.
SCIENTIFIC REPORTS (2016)
Analyses of Long Non-Coding RNA and mRNA profiling using RNA sequencing during the pre-implantation phases in pig endometrium
Yueying Wang et al.
SCIENTIFIC REPORTS (2016)
Microarray analysis of long noncoding RNA and mRNA expression profiles in human macrophages infected with Mycobacterium tuberculosis
Xiaofan Yang et al.
SCIENTIFIC REPORTS (2016)
A benchmark for RNA-seq quantification pipelines
Mingxiang Teng et al.
GENOME BIOLOGY (2016)
MICRORNA RESPONSE OF PRIMARY HUMAN MACROPHAGES TO ARCOBACTER BUTZLERI INFECTION
Jennifer zur Bruegge et al.
EUROPEAN JOURNAL OF MICROBIOLOGY AND IMMUNOLOGY (2016)
MicroRNA let-7 Modulates the Immune Response to Mycobacterium tuberculosis Infection via Control of A20, an Inhibitor of the NF-κB Pathway
Manish Kumar et al.
CELL HOST & MICROBE (2015)
Discovery, Annotation, and Functional Analysis of Long Noncoding RNAs Controlling Cell-Cycle Gene Expression and Proliferation in Breast Cancer Cells
Miao Sun et al.
MOLECULAR CELL (2015)
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim et al.
NATURE METHODS (2015)
Mycobacterium paratuberculosis as a cause of Crohn's disease
Adrienne L. McNees et al.
EXPERT REVIEW OF GASTROENTEROLOGY & HEPATOLOGY (2015)
Analysis of long non-coding RNAs highlights tissue-specific expression patterns and epigenetic profiles in normal and psoriatic skin
Lam C. Tsoi et al.
GENOME BIOLOGY (2015)
Analysis of the bovine monocyte-derived macrophage response to Mycobacterium avium subspecies paratuberculosis infection using RNA-seq
Maura E. Casey et al.
FRONTIERS IN IMMUNOLOGY (2015)
Transcriptomic and Proteomic Analyses Reveal Key Innate Immune Signatures in the Host Response to the Gastrointestinal Pathogen Campylobacter concisus
Nadeem O. Kaakoush et al.
INFECTION AND IMMUNITY (2015)
A catalogue of novel bovine long noncoding RNA across 18 tissues
Lambros T. Koufariotis et al.
PLOS ONE (2015)
featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
Yang Liao et al.
BIOINFORMATICS (2014)
Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing
Coline Billerey et al.
BMC GENOMICS (2014)
The Noncoding RNA Revolution-Trashing Old Rules to Forge New Ones
Thomas R. Cech et al.
CELL (2014)
Negative regulation of the interferon response by an interferon-induced long non-coding RNA
Hiroto Kambara et al.
NUCLEIC ACIDS RESEARCH (2014)
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Michael I. Love et al.
GENOME BIOLOGY (2014)
From mouth to macrophage: mechanisms of innate immune subversion by Mycobacterium avium subsp paratuberculosis
Ryan J. Arsenault et al.
VETERINARY RESEARCH (2014)
Identification of novel transcripts and noncoding RNAs in bovine skin by deep next generation sequencing
Rosemarie Weikard et al.
BMC GENOMICS (2013)
Global gene expression profiling of monocyte-derived macrophages from red deer (Cervus elaphus) genotypically resistant or susceptible to Mycobacterium avium subspecies paratuberculosis infection
Brooke J. Marfell et al.
DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY (2013)
MX2 is an interferon-induced inhibitor of HIV-1 infection
Melissa Kane et al.
NATURE (2013)
CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model
Liguo Wang et al.
NUCLEIC ACIDS RESEARCH (2013)
Induction of CCL8/MCP-2 by Mycobacteria through the Activation of TLR2/PI3K/Akt Signaling Pathway
Haipeng Liu et al.
PLOS ONE (2013)
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim et al.
GENOME BIOLOGY (2013)
The broad-spectrum antiviral functions of IFIT and IFITM proteins
Michael S. Diamond et al.
NATURE REVIEWS IMMUNOLOGY (2013)
GAS1 induces cell death through an intrinsic apoptotic pathway
Natanael Zarco et al.
APOPTOSIS (2012)
Mycobacterium avium subsp paratuberculosis Inhibits Gamma Interferon-Induced Signaling in Bovine Monocytes: Insights into the Cellular Mechanisms of Johne's Disease
Ryan J. Arsenault et al.
INFECTION AND IMMUNITY (2012)
Codon-usage-based inhibition of HIV protein synthesis by human schlafen 11
Manqing Li et al.
NATURE (2012)
Pan-genomic analysis of bovine monocyte-derived macrophage gene expression in response to in vitro infection with Mycobacterium avium subspecies paratuberculosis
David E. MacHugh et al.
VETERINARY RESEARCH (2012)
Conserved Function of lincRNAs in Vertebrate Embryonic Development despite Rapid Sequence Evolution
Igor Ulitsky et al.
CELL (2011)
Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression
John R. Prensner et al.
NATURE BIOTECHNOLOGY (2011)
Prevalence of paratuberculosis infection in dairy cattle in Northern Italy
N. Pozzato et al.
PREVENTIVE VETERINARY MEDICINE (2011)
Pathogenesis of Paratuberculosis
Raymond W. Sweeney
VETERINARY CLINICS OF NORTH AMERICA-FOOD ANIMAL PRACTICE (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
Da Wei Huang et al.
NATURE PROTOCOLS (2009)
Prevalence and distribution of paratuberculosis (Johne's disease) in cattle herds in Ireland
M. Good et al.
IRISH VETERINARY JOURNAL (2009)
Evaluating the potential of IP-10 and MCP-2 as biomarkers for the diagnosis of tuberculosis
M. Ruhwald et al.
EUROPEAN RESPIRATORY JOURNAL (2008)
Detection of Mycobacterium avium subspecies paratuberculosis:: Comparing fecal culture versus serum enzyme-linked immunosorbent assay and direct fecal polymerase chain reaction
D. L. Clark et al.
JOURNAL OF DAIRY SCIENCE (2008)
Rab GTPases at a glance
Samantha L. Schwartz et al.
JOURNAL OF CELL SCIENCE (2007)
CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine
Lei Kong et al.
NUCLEIC ACIDS RESEARCH (2007)
Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function
KC Pang et al.
TRENDS IN GENETICS (2006)
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
A Siepel et al.
GENOME RESEARCH (2005)
Expression of interleukin-10 and suppressor of cytokine signaling-3 associated with susceptibility of cattle to infection with Mycobacterium avium subsp paratuberculosis
DJ Weiss et al.
AMERICAN JOURNAL OF VETERINARY RESEARCH (2005)
uPM3, a new molecular urine test for the detection of prostate cancer
YF Fradet et al.
UROLOGY (2004)
Differential gene expression in mononuclear phagocytes infected with pathogenic and non-pathogenic mycobacteria
JA McGarvey et al.
CLINICAL AND EXPERIMENTAL IMMUNOLOGY (2004)
Enhanced expression of interleukin-1α and tumor necrosis factor receptor-associated protein 1 in ileal tissues of cattle infected with Mycobacterium avium subsp paratuberculosis
AD Aho et al.
INFECTION AND IMMUNITY (2003)
Phagosomal maturation and intracellular survival of Mycobacterium avium subspecies paratuberculosis in J774 cells
J Hostetter et al.
COMPARATIVE IMMUNOLOGY MICROBIOLOGY AND INFECTIOUS DISEASES (2003)
Interferon-inducible gene expression signature in peripheral blood cells of patients with severe lupus
EC Baechler et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
R Edgar et al.
NUCLEIC ACIDS RESEARCH (2002)
A new mathematical model for relative quantification in real-time RT-PCR
MW Pfaffl
NUCLEIC ACIDS RESEARCH (2001)
Prevalence and regional distribution of paratuberculosis in dairy herds in the Netherlands
J Muskens et al.
VETERINARY MICROBIOLOGY (2000)
The Pfam protein families database
A Bateman et al.
NUCLEIC ACIDS RESEARCH (2000)
分享论文
