4.6 Article

Resolving the backbone of the Brassicaceae phylogeny for investigating trait diversity

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

A Comprehensive and Dated Phylogenomic Analysis of Butterflies

Marianne Espeland et al.

CURRENT BIOLOGY (2018)

Article Multidisciplinary Sciences

Pairwise comparisons across species are problematic when analyzing functional genomic data

Casey W. Dunn et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Article Plant Sciences

Targeting legume loci: A comparison of three methods for target enrichment bait design in Leguminosae phylogenomics

Mohammad Vatanparast et al.

APPLICATIONS IN PLANT SCIENCES (2018)

Article Ecology

Explosive diversification of marine fishes at the Cretaceous-Palaeogene boundary

Michael E. Alfaro et al.

NATURE ECOLOGY & EVOLUTION (2018)

Article Biochemistry & Molecular Biology

Recalcitrant deep and shallow nodes in Aristolochia (Aristolochiaceae) illuminated using anchored hybrid enrichment

Stefan Wanke et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2017)

Article Biochemistry & Molecular Biology

A pilot study applying the plant Anchored Hybrid Enrichment method to New World sages (Salvia subgenus Calosphace; Lamiaceae)

Itzi Fragoso-Martinez et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2017)

Article Ecology

Contentious relationships in phylogenomic studies can be driven by a handful of genes

Xing-Xing Shen et al.

NATURE ECOLOGY & EVOLUTION (2017)

Review Biochemistry & Molecular Biology

Embracing Uncertainty in Reconstructing Early Animal Evolution

Nicole King et al.

CURRENT BIOLOGY (2017)

Article Plant Sciences

Anatolian origins and diversification of Aethionema, the sister lineage of the core Brassicaceae

Setareh Mohammadin et al.

AMERICAN JOURNAL OF BOTANY (2017)

Review Plant Sciences

Using mustard genomes to explore the genetic basis of evolutionary change

Lachezar A. Nikolov et al.

CURRENT OPINION IN PLANT BIOLOGY (2017)

Article Biochemistry & Molecular Biology

Resolution of Brassicaceae Phylogeny Using Nuclear Genes Uncovers Nested Radiations and Supports Convergent Morphological Evolution

Chien-Hsun Huang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Review Plant Sciences

50 years of Arabidopsis research: highlights and future directions

Nicholas J. Provart et al.

NEW PHYTOLOGIST (2016)

Review Plant Sciences

Compound leaf development in model plant species

Maya Bar et al.

CURRENT OPINION IN PLANT BIOLOGY (2015)

Review Genetics & Heredity

Beyond the thale: comparative genomics and genetics of Arabidopsis relatives

Daniel Koenig et al.

NATURE REVIEWS GENETICS (2015)

Article Biochemistry & Molecular Biology

Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera

Brant C. Faircloth et al.

MOLECULAR ECOLOGY RESOURCES (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Article Evolutionary Biology

Selecting optimal partitioning schemes for phylogenomic datasets

Robert Lanfear et al.

BMC EVOLUTIONARY BIOLOGY (2014)

Article Evolutionary Biology

TreSpEx-Detection of Misleading Signal in Phylogenetic Reconstructions Based on Tree Information

Torsten H. Struck

EVOLUTIONARY BIOINFORMATICS (2014)

Article Biochemistry & Molecular Biology

Modeling Gene Expression Evolution with an Extended Ornstein-Uhlenbeck Process Accounting for Within-Species Variation

Rori V. Rohlfs et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Article Plant Sciences

BrassiBase: Introduction to a Novel Knowledge Database on Brassicaceae Evolution

Markus Kiefer et al.

PLANT AND CELL PHYSIOLOGY (2014)

Article Plant Sciences

HYB-SEQ: COMBINING TARGET ENRICHMENT AND GENOME SKIMMING FOR PLANT PHYLOGENOMICS

Kevin Weitemier et al.

APPLICATIONS IN PLANT SCIENCES (2014)

Review Ecology

High-Throughput Genomic Data in Systematics and Phylogenetics

Emily Moriarty Lemmon et al.

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 44 (2013)

Article Multidisciplinary Sciences

Targeted Enrichment: Maximizing Orthologous Gene Comparisons across Deep Evolutionary Time

Shannon M. Hedtke et al.

PLOS ONE (2013)

Article Mathematical & Computational Biology

Normalization, testing, and false discovery rate estimation for RNA-sequencing data

Jun Li et al.

BIOSTATISTICS (2012)

Review Evolutionary Biology

TreeCmp: Comparison of Trees in Polynomial Time

Damian Bogdanowicz et al.

EVOLUTIONARY BIOINFORMATICS (2012)

Article Biochemistry & Molecular Biology

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

Daniel C. Koboldt et al.

GENOME RESEARCH (2012)

Article Plant Sciences

A generic and tribal synopsis of the Brassicaceae (Cruciferae)

Ihsan A. Al-Shehbaz

Article Biochemical Research Methods

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

Bo Li et al.

BMC BIOINFORMATICS (2011)

Review Biochemistry & Molecular Biology

Evolution of Gene Regulatory Networks Controlling Body Plan Development

Isabelle S. Peter et al.

Article Biotechnology & Applied Microbiology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred G. Grabherr et al.

NATURE BIOTECHNOLOGY (2011)

Article Multidisciplinary Sciences

MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons

Vincent Ranwez et al.

PLOS ONE (2011)

Review Plant Sciences

Cabbage family affairs: the evolutionary history of Brassicaceae

Andreas Franzke et al.

TRENDS IN PLANT SCIENCE (2011)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Review Biochemistry & Molecular Biology

CRL4s: the CUL4-RING E3 ubiquitin ligases

Sarah Jackson et al.

TRENDS IN BIOCHEMICAL SCIENCES (2009)

Article Biochemistry & Molecular Biology

PAML 4: Phylogenetic analysis by maximum likelihood

Ziheng Yang

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Biochemistry & Molecular Biology

Toward a global phylogeny of the Brassicaceae

C. Donovan Bailey et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Article Plant Sciences

Brassicaceae phylogeny and trichome evolution

MA Beilstein et al.

AMERICAN JOURNAL OF BOTANY (2006)

Article Biochemical Research Methods

APE: Analyses of Phylogenetics and Evolution in R language

E Paradis et al.

BIOINFORMATICS (2004)

Article Biochemistry & Molecular Biology

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

K Katoh et al.

NUCLEIC ACIDS RESEARCH (2002)

Article Biochemistry & Molecular Biology

BLAT - The BLAST-like alignment tool

WJ Kent

GENOME RESEARCH (2002)

Article Biochemical Research Methods

CONSEL: for assessing the confidence of phylogenetic tree selection

H Shimodaira et al.

BIOINFORMATICS (2001)