期刊
ANALYTICA CHIMICA ACTA
卷 912, 期 -, 页码 58-64出版社
ELSEVIER
DOI: 10.1016/j.aca.2016.01.049
关键词
In-situ; Sample preparation; Filter; Microwave; Trace proteome analysis
资金
- National Basic Research Program of China [2012CB910604]
- National Natural Science Foundation [21405153, 21505136]
- Creative Research Group Project by NSFC [21321064]
An integrated sample preparation method, termed imFASP, which combined in-situ filter-aided sample pretreatment and microwave-assisted trypsin digestion, was developed for preparation of microgram and even nanogram amounts of complex protein samples with high efficiency in 1 h. For imFASP method, proteins dissolved in 8 M urea were loaded onto a filter device with molecular weight cut off (MWCO) as 10 kDa, followed by in-situ protein preconcentration, denaturation, reduction, alkylation, and microwave-assisted tryptic digestion. Compared with traditional in-solution sample preparation method, imFASP method generated more protein and peptide identifications (IDs) from preparation of 45 mg Escherichia coli protein sample due to the higher efficiency, and the sample preparation throughput was significantly improved by 14 times (1 h vs. 15 h). More importantly, when the starting amounts of E. coli cell lysate decreased to nanogram level (50-500 ng), the protein and peptide identified by imFASP method were improved at least 30% and 44%, compared with traditional in-solution preparation method, suggesting dramatically higher peptide recovery of imFASP method for trace amounts of complex proteome samples. All these results demonstrate that the imFASP method developed here is of high potential for high efficient and high throughput preparation of trace amounts of complex proteome samples. (C) 2016 Elsevier B.V. All rights reserved.
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