相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Comparative genome and phenotypic analysis of three Clostridioides difficile strains isolated from a single patient provide insight into multiple infection of C. difficile
Uwe Gross et al.
BMC GENOMICS (2018)
Integrative taxonomy at the nexus of population divergence and speciation in insular speckled rattlesnakes
Jesse M. Meik et al.
JOURNAL OF NATURAL HISTORY (2018)
Mitonuclear discordance in wolf spiders: Genomic evidence for species integrity and introgression
Vladislav Ivanov et al.
MOLECULAR ECOLOGY (2018)
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7
Andrew Rambaut et al.
SYSTEMATIC BIOLOGY (2018)
Purifying selection and genetic drift shaped Pleistocene evolution of the mitochondrial genome in an endangered Australian freshwater fish
A. Pavlova et al.
HEREDITY (2017)
Molecular, morphological and acoustic assessment of the genus Ophryophryne (Anura, Megophryidae) from Langbian Plateau, southern Vietnam, with description of a new species
Nikolay A. Poyarkov et al.
ZOOKEYS (2017)
Prediction of harmful variants on mitochondrial genes: Test of habitat-dependent and demographic effects in a euryhaline fish
Anti Vasemagi et al.
ECOLOGY AND EVOLUTION (2017)
Integrative Approaches for Studying Mitochondrial and Nuclear Genome Co-evolution in Oxidative Phosphorylation
Paul Sunnucks et al.
FRONTIERS IN GENETICS (2017)
bModelTest: Bayesian phylogenetic site model averaging and model comparison
Remco R. Bouckaert et al.
BMC EVOLUTIONARY BIOLOGY (2017)
The complete mitochondrial genome of the black-tailed brush lizard Urosaurus nigricaudus (Reptilia, Squamata, Phrynosomatidae)
Pedro Henrique Bernardo et al.
MITOCHONDRIAL DNA PART A (2016)
Mitochondrial Dynamics and Metabolic Regulation
Timothy Wai et al.
TRENDS IN ENDOCRINOLOGY AND METABOLISM (2016)
Parallel Structural Evolution of Mitochondrial Ribosomes and OXPHOS Complexes
Eli O. van der Sluis et al.
GENOME BIOLOGY AND EVOLUTION (2015)
Mitochondrial Involvement in Vertebrate Speciation? The Case of Mito-nuclear Genetic Divergence in Chameleons
Dan Bar-Yaacov et al.
GENOME BIOLOGY AND EVOLUTION (2015)
Mitonuclear Ecology
Geoffrey E. Hill
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Positive and purifying selection in mitochondrial genomes of a bird with mitonuclear discordance
Hernan E. Morales et al.
MOLECULAR ECOLOGY (2015)
Concordant species delimitation from multiple independent evidence: A case study with the Pachytriton brevipes complex (Caudata: Salamandridae)
Yunke Wu et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2015)
RDP4: Detection and analysis of recombination patterns in virus genomes
Darren P. Martin et al.
VIRUS EVOLUTION (2015)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
The Elusive Nature of Adaptive Mitochondrial DNA Evolution of an Arctic Lineage Prone to Frequent Introgression
Jose Melo-Ferreira et al.
GENOME BIOLOGY AND EVOLUTION (2014)
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
Remco Bouckaert et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Mito-nuclear co-evolution: the positive and negative sides of functional ancient mutations
Liron Levin et al.
FRONTIERS IN GENETICS (2014)
Localized extinction of an arboreal desert lizard caused by habitat fragmentation
Adrian Munguia-Vega et al.
BIOLOGICAL CONSERVATION (2013)
Purifying Selection in Mammalian Mitochondrial Protein-Coding Genes Is Highly Effective and Congruent with Evolution of Nuclear Genes
Konstantin Yu Popadin et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Stacks: an analysis tool set for population genomics
Julian Catchen et al.
MOLECULAR ECOLOGY (2013)
Cytochrome b gene selection of subterranean rodent Gansu zokor Eospalax cansus (Rodentia, Spalacidae)
Tongzuo Zhang et al.
ZOOLOGISCHER ANZEIGER (2013)
Genetic evidence for male-biased dispersal in the Qinghai toad-headed agamid Phrynocephalus vlangalii and its potential link to individual social interactions
Yin Qi et al.
ECOLOGY AND EVOLUTION (2013)
A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection
Philippe Lemey et al.
BIOINFORMATICS (2012)
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
Matthew Kearse et al.
BIOINFORMATICS (2012)
Mitochondrial-Nuclear Interactions and Accelerated Compensatory Evolution: Evidence from the Primate Cytochrome c Oxidase Complex
Naoki Osada et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
Alexei J. Drummond et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
adegenet 1.3-1: new tools for the analysis of genome-wide SNP data
Thibaut Jombart et al.
BIOINFORMATICS (2011)
Mitogenomic analysis of Chinese snub-nosed monkeys: Evidence of positive selection in NADH dehydrogenase genes in high-altitude adaptation
Li Yu et al.
MITOCHONDRION (2011)
pegas: an R package for population genetics with an integrated-modular approach
Emmanuel Paradis
BIOINFORMATICS (2010)
Sex Chromosome Evolution in Lizards: Independent Origins and Rapid Transitions
T. Ezaz et al.
CYTOGENETIC AND GENOME RESEARCH (2009)
Nuclear and mitochondrial DNA reveal contrasting evolutionary processes in populations of deer mice (Peromyscus maniculatus)
Dou-Shuan Yang et al.
MOLECULAR ECOLOGY (2009)
Female aggression predicts mode of paternity acquisition in a social lizard
Geoffrey M. While et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2009)
Genetic modulation of energy metabolism in birds through mitochondrial function
B. Irene Tieleman et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2009)
adegenet:: a R package for the multivariate analysis of genetic markers
Thibaut Jombart
BIOINFORMATICS (2008)
Deep biogeographical history and cytonuclear discordance in the black-tailed brush lizard (Urosaurus nigricaudus) of Baja California
Johan Lindell et al.
BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2008)
Purifying selection of mtDNA and its implications for understanding evolution and mitochondrial disease
James Bruce Stewart et al.
NATURE REVIEWS GENETICS (2008)
The Population Genetics of dN/dS
Sergey Kryazhimskiy et al.
PLOS GENETICS (2008)
Accumulation of slightly deleterious mutations in mitochondrial protein-coding genes of large versus small mammals
Konstantin Popadin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Speciation by hybridization in Heliconius butterflies
Jesus Mavarez et al.
NATURE (2006)
Deep genealogical history without population differentiation:: Discordance between mtDNA and allozyme divergence in the zebra-tailed lizard (Callisaurus draconoides)
J Lindell et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2005)
Bayes empirical Bayes inference of amino acid sites under positive selection
ZH Yang et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
Identifying spiders through DNA barcodes
RDH Barrett et al.
CANADIAN JOURNAL OF ZOOLOGY (2005)
HIERFSTAT, a package for R to compute and test hierarchical F-statistics
J Goudet
MOLECULAR ECOLOGY NOTES (2005)
Mitochondrial genome of the Komodo dragon: Efficient sequencing method with reptile-oriented primers and novel gene rearrangements
Y Kumazawa et al.
DNA RESEARCH (2004)
The incomplete natural history of mitochondria
JWO Ballard et al.
MOLECULAR ECOLOGY (2004)
APE: Analyses of Phylogenetics and Evolution in R language
E Paradis et al.
BIOINFORMATICS (2004)
Cytonuclear coevolution: the genomics of cooperation
DM Rand et al.
TRENDS IN ECOLOGY & EVOLUTION (2004)
Genetic hitchhiking
NH Barton
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2000)