相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Novel Caudovirales associated with Marine Group I Thaumarchaeota assembled from metagenomes
Mario Lopez-Perez et al.
ENVIRONMENTAL MICROBIOLOGY (2019)
Discovery of several novel, widespread, and ecologically distinct marine Thaumarchaeota viruses that encode amoC nitrification genes
Nathan A. Ahlgren et al.
ISME JOURNAL (2019)
Cyanophage-encoded lipid desaturases: oceanic distribution, diversity and function
Sheila Roitman et al.
ISME JOURNAL (2018)
Rolling-circle replication initiation protein of haloarchaeal sphaerolipovirus SNJ1 is homologous to bacterial transposases of the IS91 family insertion sequences
Yuchen Wang et al.
JOURNAL OF GENERAL VIROLOGY (2018)
Novel Families of Archaeo-Eukaryotic Primases Associated with Mobile Genetic Elements of Bacteria and Archaea
Darius Kazlauskas et al.
JOURNAL OF MOLECULAR BIOLOGY (2018)
A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core
Lukas Zimmermann et al.
JOURNAL OF MOLECULAR BIOLOGY (2018)
Cas4 Nucleases Define the PAM, Length, and Orientation of DNA Fragments Integrated at CRISPR Loci
Masami Shiimori et al.
MOLECULAR CELL (2018)
A novel family of tyrosine integrases encoded by the temperate pleolipovirus SNJ2
Jiao Wang et al.
NUCLEIC ACIDS RESEARCH (2018)
Vast diversity of prokaryotic virus genomes encoding double jelly-roll major capsid proteins uncovered by genomic and metagenomic sequence analysis
Natalya Yutin et al.
VIROLOGY JOURNAL (2018)
Viruses of archaea: Structural, functional, environmental and evolutionary genomics
Mart Krupovic et al.
VIRUS RESEARCH (2018)
Cas4 Facilitates PAM-Compatible Spacer Selection during CRISPR Adaptation
Sebastian N. Kieper et al.
CELL REPORTS (2018)
Candidatus Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome
Sophie S. Abby et al.
FRONTIERS IN MICROBIOLOGY (2018)
Cultivation and Genomic Analysis of Candidatus Nitrosocaldus islandicus, an Obligately Thermophilic, Ammonia-Oxidizing Thaumarchaeon from a Hot Spring Biofilm in Graendalur Valley, Iceland
Anne Daebeler et al.
FRONTIERS IN MICROBIOLOGY (2018)
Archaeal Viruses from High-Temperature Environments
Jacob H. Munson-McGee et al.
GENES (2018)
Mobile Genetic Elements Associated with Antimicrobial Resistance
Sally R. Partridge et al.
CLINICAL MICROBIOLOGY REVIEWS (2018)
The depths of virus exaptation
Eugene V. Koonin et al.
CURRENT OPINION IN VIROLOGY (2018)
Classification and Nomenclature of CRISPR-Cas Systems: Where from Here?
Kira S. Makarova et al.
CRISPR JOURNAL (2018)
High Prevalence and Genetic Diversity of Large phiCD211(phiCDIF1296T)-Like Prophages in Clostridioides difficile
Julian R. Garneau et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2018)
Ammonia-oxidising archaea living at low pH: Insights from comparative genomics
Craig W. Herbold et al.
ENVIRONMENTAL MICROBIOLOGY (2017)
Genome and epigenome of a novel marine Thaumarchaeota strain suggest viral infection, phosphorothioation DNA modification and multiple restriction systems
Nathan A. Ahlgren et al.
ENVIRONMENTAL MICROBIOLOGY (2017)
Structured Populations of Sulfolobus acidocaldarius with Susceptibility to Mobile Genetic Elements
Rika E. Anderson et al.
GENOME BIOLOGY AND EVOLUTION (2017)
How a Genetically Stable Extremophile Evolves: Modes of Genome Diversification in the Archaeon Sulfolobus acidocaldarius
Dominic Mao et al.
JOURNAL OF BACTERIOLOGY (2017)
The enigmatic archaeal virosphere
David Prangishvili et al.
NATURE REVIEWS MICROBIOLOGY (2017)
Recruitment of CRISPR-Cas systems by Tn7-like transposons
Joseph E. Peters et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Transposable Element Domestication As an Adaptation to Evolutionary Conflicts
Diwash Jangam et al.
TRENDS IN GENETICS (2017)
Primer-Independent DNA Synthesis by a Family B DNA Polymerase from Self-Replicating Mobile Genetic Elements
Modesto Redrejo-Rodriguez et al.
CELL REPORTS (2017)
Co-option of endogenous viral sequences for host cell function
John A. Frank et al.
CURRENT OPINION IN VIROLOGY (2017)
Flipping chromosomes in deep-sea archaea
Matteo Cossu et al.
PLOS GENETICS (2017)
The Obscure World of Integrative and Mobilizable Elements, Highly Widespread Elements that Pirate Bacterial Conjugative Systems
Gerard Guedon et al.
GENES (2017)
vConTACT: an iVirus tool to classify double-stranded DNA viruses that infect Archaea and Bacteria
Benjamin Bolduc et al.
PEERJ (2017)
The Distribution, Evolution, and Roles of Gene Transfer Agents in Prokaryotic Genetic Exchange
Andrew S. Lang et al.
Annual Review of Virology (2017)
A myovirus encoding both photosystem I and II proteins enhances cyclic electron flow in infected Prochlorococcus cells
Svetlana Fridman et al.
NATURE MICROBIOLOGY (2017)
Casposons: mobile genetic elements that gave rise to the CRISPR-Cas adaptation machinery
Mart Krupovic et al.
CURRENT OPINION IN MICROBIOLOGY (2017)
Phylogenomics of Cas4 family nucleases
Sanjarbek Hudaiberdiev et al.
BMC EVOLUTIONARY BIOLOGY (2017)
Staphylococcal pathogenicity islands - movers and shakers in the genomic firmament
Richard P. Novick et al.
CURRENT OPINION IN MICROBIOLOGY (2017)
Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation
Barbara Bayer et al.
ISME JOURNAL (2016)
Identifying Potential Mechanisms Enabling Acidophily in the Ammonia-Oxidizing Archaeon Candidatus Nitrosotalea devanaterra
Laura E. Lehtovirta-Morley et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2016)
Viral metabolic reprogramming in marine ecosystems
Bonnie L. Hurwitz et al.
CURRENT OPINION IN MICROBIOLOGY (2016)
Recent Mobility of Casposons, Self-Synthesizing Transposons at the Origin of the CRISPR-Cas Immunity
Mart Krupovic et al.
GENOME BIOLOGY AND EVOLUTION (2016)
Pathways and key intermediates required for obligate aerobic ammonia-dependent chemolithotrophy in bacteria and Thaumarchaeota
Jessica A. Kozlowski et al.
ISME JOURNAL (2016)
Bipartite Network Analysis of the Archaeal Virosphere: Evolutionary Connections between Viruses and Capsidless Mobile Elements
Jaime Iranzo et al.
JOURNAL OF VIROLOGY (2016)
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
Simon Roux et al.
NATURE (2016)
Staphylococcal SCCmec elements encode an active MCM-like helicase and thus may be replicative
Ignacio Mir-Sanchis et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
The logic of DNA replication in double-stranded DNA viruses: insights from global analysis of viral genomes
Darius Kazlauskas et al.
NUCLEIC ACIDS RESEARCH (2016)
Predominance of Single Prophage Carrying a CRISPR/cas System in Candidatus Liberibacter asiaticus Strains in Southern China
Zheng Zheng et al.
PLOS ONE (2016)
The Floating (Pathogenicity) Island: A Genomic Dessert
Richard P. Novick et al.
TRENDS IN GENETICS (2016)
Viruses Infecting a Freshwater Filamentous Cyanobacterium (Nostoc sp.) Encode a Functional CRISPR Array and a Proteobacterial DNA Polymerase B
Caroline Chenard et al.
MBIO (2016)
The Double-Stranded DNA Virosphere as a Modular Hierarchical Network of Gene Sharing
Jaime Iranzo et al.
MBIO (2016)
Staphylococcal SCCmec elements encode an active MCM-like helicase and thus may be replicative
Ignacio Mir-Sanchis et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2016)
Diversity and Evolution of Type IV pili Systems in Archaea
Kira S. Makarova et al.
FRONTIERS IN MICROBIOLOGY (2016)
Virus-mediated archaeal hecatomb in the deep seafloor
Roberto Danovaro et al.
SCIENCE ADVANCES (2016)
A novel ammonia-oxidizing archaeon from wastewater treatment plant: Its enrichment, physiological and genomic characteristics
Yuyang Li et al.
SCIENTIFIC REPORTS (2016)
Integrative and Conjugative Elements (ICEs): What They Do and How They Work
Christopher M. Johnson et al.
ANNUAL REVIEW OF GENETICS, VOL 49 (2015)
Mysterious hexagonal pyramids on the surface of Pyrobaculum cells
Elena Rensen et al.
BIOCHIMIE (2015)
Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton
Jessica M. Labonte et al.
ISME JOURNAL (2015)
Archaeal Extrachromosomal Genetic Elements
Haina Wang et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2015)
Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems
Sergey Shmakov et al.
MOLECULAR CELL (2015)
The casposon-encoded Cas1 protein from Aciduliprofundum boonei is a DNA integrase that generates target site duplications
Alison B. Hickman et al.
NUCLEIC ACIDS RESEARCH (2015)
Genomic and proteomic characterization of Candidatus Nitrosopelagicus brevis: An ammonia-oxidizing archaeon from the open ocean
Alyson E. Santoro et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
40 Years of archaeal virology: Expanding viral diversity
Jamie C. Snyder et al.
VIROLOGY (2015)
Polintons: a hotbed of eukaryotic virus, transposon and plasmid evolution
Mart Krupovic et al.
NATURE REVIEWS MICROBIOLOGY (2015)
Casposons: a new superfamily of self-synthesizing DNA transposons at the origin of prokaryotic CRISPR-Cas immunity
Mart Krupovic et al.
BMC BIOLOGY (2014)
Extracellular membrane vesicles harbouring viral genomes
Marie Gaudin et al.
ENVIRONMENTAL MICROBIOLOGY (2014)
Dark matter in archaeal genomes: a rich source of novel mobile elements, defense systems and secretory complexes
Kira S. Makarova et al.
EXTREMOPHILES (2014)
Extensive Gene Remodeling in the Viral World: New Evidence for Nongradual Evolution in the Mobilome Network
Pierre-Alain Jachiet et al.
GENOME BIOLOGY AND EVOLUTION (2014)
Genomes of Two New Ammonia-Oxidizing Archaea Enriched from Deep Marine Sediments
Soo-Je Park et al.
PLOS ONE (2014)
Genome Sequence of Candidatus Nitrososphaera evergladensis from Group I.1b Enriched from Everglades Soil Reveals Novel Genomic Features of the Ammonia-Oxidizing Archaea
Kateryna V. Zhalnina et al.
PLOS ONE (2014)
Sulfur Oxidation Genes in Diverse Deep-Sea Viruses
Karthik Anantharaman et al.
SCIENCE (2014)
Archaeal viruses and bacteriophages: comparisons and contrasts
Maija K. Pietila et al.
TRENDS IN MICROBIOLOGY (2014)
Abundant and Diverse Clustered Regularly Interspaced Short Palindromic Repeat Spacers in Clostridium difficile Strains and Prophages Target Multiple Phage Types within This Pathogen
Katherine R. Hargreaves et al.
MBIO (2014)
Evolution of replicative DNA polymerases in archaea and their contributions to the eukaryotic replication machinery
Kira S. Makarova et al.
FRONTIERS IN MICROBIOLOGY (2014)
CARE and WYL domains: ligand-binding regulators of prokaryotic defense systems
Kira S. Makarova et al.
FRONTIERS IN GENETICS (2014)
Plasmids from Euryarchaeota
Patrick Forterre et al.
MICROBIOLOGY SPECTRUM (2014)
Archaea in Biogeochemical Cycles
Pierre Offre et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 67 (2013)
Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing
Vivek Anantharaman et al.
BIOLOGY DIRECT (2013)
A bacteriophage encodes its own CRISPR/Cas adaptive response to evade host innate immunity
Kimberley D. Seed et al.
NATURE (2013)
Enrichment and Genome Sequence of the Group I. 1a Ammonia-Oxidizing Archaeon Ca. Nitrosotenuis uzonensis Representing a Clade Globally Distributed in Thermal Habitats
Elena V. Lebedeva et al.
PLOS ONE (2013)
Integrative mobile elements exploiting Xer recombination
Bhabatosh Das et al.
TRENDS IN MICROBIOLOGY (2013)
Physiology and Diversity of Ammonia-Oxidizing Archaea
David A. Stahl et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 66 (2012)
Unipro UGENE: a unified bioinformatics toolkit
Konstantin Okonechnikov et al.
BIOINFORMATICS (2012)
The genome of the ammonia-oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations
Anja Spang et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Gene transfer agents: phage-like elements of genetic exchange
Andrew S. Lang et al.
NATURE REVIEWS MICROBIOLOGY (2012)
Complete genome sequence of Pyrobaculum oguniense
David L. Bernick et al.
STANDARDS IN GENOMIC SCIENCES (2012)
Structure and function of the primase domain of the replication protein from the archaeal plasmid pRN1
Georg Lipps
BIOCHEMICAL SOCIETY TRANSACTIONS (2011)
A thaumarchaeal provirus testifies for an ancient association of tailed viruses with archaea
Mart Krupovic et al.
BIOCHEMICAL SOCIETY TRANSACTIONS (2011)
Easyfig: a genome comparison visualizer
Mitchell J. Sullivan et al.
BIOINFORMATICS (2011)
Genome Sequence of an Ammonia-Oxidizing Soil Archaeon, Candidatus Nitrosoarchaeum koreensis MY1
Byung Kwon Kim et al.
JOURNAL OF BACTERIOLOGY (2011)
Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group
Takuro Nunoura et al.
NUCLEIC ACIDS RESEARCH (2011)
Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil
Laura E. Lehtovirta-Morley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil
Maria Tourna et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism
Luke R. Thompson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
ISsaga is an ensemble of web-based methods for high throughput identification and semi-automatic annotation of insertion sequences in prokaryotic genomes
Alessandro M. Varani et al.
GENOME BIOLOGY (2011)
Type IV secretion systems: versatility and diversity in function
Karin Wallden et al.
CELLULAR MICROBIOLOGY (2010)
Regulation of bacterial conjugation: balancing opportunity with adversity
Laura S. Frost et al.
FUTURE MICROBIOLOGY (2010)
Comparative Analysis of the Mosaic Genomes of Tailed Archaeal Viruses and Proviruses Suggests Common Themes for Virion Architecture and Assembly with Tailed Viruses of Bacteria
Mart Krupovic et al.
JOURNAL OF MOLECULAR BIOLOGY (2010)
Familial Relationships in Hyperthermo- and Acidophilic Archaeal Viruses
Lotta Johanna Happonen et al.
JOURNAL OF VIROLOGY (2010)
The Evolutionary History of Archaeal MCM Helicases: A Case Study of Vertical Evolution Combined with Hitchhiking of Mobile Genetic Elements
Mart Krupovic et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
Aaron E. Darling et al.
PLOS ONE (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
Photosystem I gene cassettes are present in marine virus genomes
Itai Sharon et al.
NATURE (2009)
Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria
Willm Martens-Habbena et al.
NATURE (2009)
OPINION Virus evolution: how far does the double β-barrel viral lineage extend?
Mart Krupovic et al.
NATURE REVIEWS MICROBIOLOGY (2008)
Archaeal proviruses TKV4 and MVV extend the PRD1-adenovirus lineage to the phylum Euryarchaeota
Mart Krupovic et al.
VIROLOGY (2008)
Insertion sequence diversity in Archaea
J. Filee et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2007)
Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum
Steven J. Hallam et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Archaeal nitrification in the ocean
Cornelia Wuchter et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Comparative genomics of Thermus thermophilus and Deinococcus radiodurans:: divergent routes of adaptation to thermophily and radiation resistance -: art. no. 57
MV Omelchenko et al.
BMC EVOLUTIONARY BIOLOGY (2005)
Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: structural insights and new members
LM Iyer et al.
NUCLEIC ACIDS RESEARCH (2005)
Archaeal integrases and mechanisms of gene capture
Q She et al.
BIOCHEMICAL SOCIETY TRANSACTIONS (2004)
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
RC Edgar
BMC BIOINFORMATICS (2004)
Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: implications for the origins of chromosome segregation, cell division and viral capsid packaging
LM Iyer et al.
NUCLEIC ACIDS RESEARCH (2004)
The structure of a thermophilic archaeal virus shows a double-stranded DNA viral capsid type that spans all domains of life
G Rice et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Archaeal integrative genetic elements and their impact on genome evolution
QX She et al.
RESEARCH IN MICROBIOLOGY (2002)
Integration sites for genetic elements in prokaryotic tRNA and tmRNA genes: sublocation preference of integrase subfamilies
KP Williams
NUCLEIC ACIDS RESEARCH (2002)
Integrative genetic element that reverses the usual target gene orientation
SH Zhao et al.
JOURNAL OF BACTERIOLOGY (2002)
分享论文
