相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
Emmanuel Paradis et al.
BIOINFORMATICS (2019)
Evolutionary determinants of genome-wide nucleotide composition
Hongan Long et al.
NATURE ECOLOGY & EVOLUTION (2018)
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
Yasuhiro Tanizawa et al.
BIOINFORMATICS (2018)
Sources of spontaneous mutagenesis in bacteria
Jeremy W. Schroeder et al.
CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2018)
Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements
Supratim Mukherjee et al.
NUCLEIC ACIDS RESEARCH (2017)
Bacterial Physiological Adaptations to Contrasting Edaphic Conditions Identified Using Landscape Scale Metagenomics
Ashish A. Malik et al.
MBIO (2017)
Effect of the environment on horizontal gene transfer between bacteria and archaea
Clara A. Fuchsman et al.
PEERJ (2017)
Enzymatic Antioxidant Systems in Early Anaerobes: Theoretical Considerations
Ireneusz Slesak et al.
ASTROBIOLOGY (2016)
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
Sudhir Kumar et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Genomes of Abundant and Widespread Viruses from the Deep Ocean
Carolina Megumi Mizuno et al.
MBIO (2016)
Mitochondrial DNA: Radically free of free-radical driven mutations
Johanna H. K. Kauppila et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2015)
The dnaJ gene as a molecular discriminator to differentiate among species and strain within the Lactobacillus casei group
Chien-Hsun Huang et al.
MOLECULAR AND CELLULAR PROBES (2015)
Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing
Patricia L. Foster et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
GC-Content Evolution in Bacterial Genomes: The Biased Gene Conversion Hypothesis Expands
Florent Lassalle et al.
PLOS GENETICS (2015)
Rfam 12.0: updates to the RNA families database
Eric P. Nawrocki et al.
NUCLEIC ACIDS RESEARCH (2015)
The Evolution of Bacterial DNA Base Composition
Deepa Agashe et al.
JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION (2014)
Molecular mechanisms of adaptation emerging from the physics and evolution of nucleic acids and proteins
Alexander Goncearenco et al.
NUCLEIC ACIDS RESEARCH (2014)
Infernal 1.1: 100-fold faster RNA homology searches
Eric P. Nawrocki et al.
BIOINFORMATICS (2013)
OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis
Matthew D. Whiteside et al.
NUCLEIC ACIDS RESEARCH (2013)
Amino Acid Usage Is Asymmetrically Biased in AT- and GC-Rich Microbial Genomes
Jon Bohlin et al.
PLOS ONE (2013)
ANCAC: amino acid, nucleotide, and codon analysis of COGs - a tool for sequence bias analysis in microbial orthologs
Arno Meiler et al.
BMC BIOINFORMATICS (2012)
Chemical and biological consequences of oxidatively damaged guanine in DNA
Sarah Delaney et al.
FREE RADICAL RESEARCH (2012)
Evidence for Widespread GC-biased Gene Conversion in Eukaryotes
Eugenie Pessia et al.
GENOME BIOLOGY AND EVOLUTION (2012)
Analyzing large biological datasets with association networks
Tatiana V. Karpinets et al.
NUCLEIC ACIDS RESEARCH (2012)
Bioinformatics analysis of disordered proteins in prokaryotes
Gordana M. Pavlovic-Lazetic et al.
BMC BIOINFORMATICS (2011)
Release LTPs104 of the All-Species Living Tree
Raul Munoz et al.
SYSTEMATIC AND APPLIED MICROBIOLOGY (2011)
Oxidation of DNA: Damage to Nucleobases
Sriram Kanvah et al.
ACCOUNTS OF CHEMICAL RESEARCH (2010)
Analysis of intra-genomic GC content homogeneity within prokaryotes
Jon Bohlin et al.
BMC GENOMICS (2010)
Bacterial genomic G plus C composition-eliciting environmental adaptation
Scott Mann et al.
GENOMICS (2010)
Mutation Bias Favors Protein Folding Stability in the Evolution of Small Populations
Raul Mendez et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Mutational Patterns Cannot Explain Genome Composition: Are There Any Neutral Sites in the Genomes of Bacteria?
Eduardo P. C. Rocha et al.
PLOS GENETICS (2010)
Oxygen and Guanine-Cytosine Profiles in Marine Environments
Hector Romero et al.
JOURNAL OF MOLECULAR EVOLUTION (2009)
dnaJ is a useful phylogenetic marker for alphaproteobacteria
Ana Alexandre et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2008)
An assessment of the impacts of molecular oxygen on the evolution of proteomes
Sara Vieira-Silva et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Aerotolerance of strictly anaerobic microorganisms and factors of defense against oxidative stress: A review
A. L. Brioukhanov et al.
APPLIED BIOCHEMISTRY AND MICROBIOLOGY (2007)
Mycobacterium species identification -: A new approach via dnaJ gene sequencing
Makiko Yamada-Noda et al.
SYSTEMATIC AND APPLIED MICROBIOLOGY (2007)
Genomic GC level, optimal growth temperature, and genome size in prokaryotes
Hector Musto et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2006)
Improving the specificity of high-throughput ortholog prediction
Debra L. Fulton et al.
BMC BIOINFORMATICS (2006)
On the correlation between genomic G+C content and optimal growth temperature in prokaryotes: Data quality and confounding factors
HC Wang et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2006)
The sacrificial role of easily oxidizable sites in the protection of DNA from damage
S Kanvah et al.
NUCLEIC ACIDS RESEARCH (2005)
Endogenous DNA damage in humans: a review of quantitative data
R De Bont et al.
MUTAGENESIS (2004)
Molecular fingerprinting of dairy microbial ecosystems by use of temporal temperature and denaturing gradient gel electrophoresis
JC Ogier et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)
Correlations between genomic GC levels and optimal growth temperatures in prokaryotes
H Musto et al.
FEBS LETTERS (2004)
Aerobiosis increases the genomic guanine plus cytosine content (GC%) in prokaryotes
H Naya et al.
JOURNAL OF MOLECULAR EVOLUTION (2002)
On the non-uniform distribution of guanine in introns of human genes: Possible protection of exons against oxidation by proximal intron poly-G sequences
KA Friedman et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2001)
High guanine-cytosine content is not an adaptation to high temperature: a comparative analysis amongst prokaryotes
LD Hurst et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2001)