4.7 Article

HTT-DB: Horizontally transferred transposable elements database

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BIOINFORMATICS
卷 31, 期 17, 页码 2915-2917

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OXFORD UNIV PRESS
DOI: 10.1093/bioinformatics/btv281

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  1. Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior (CAPES)
  2. Fundacao de Amparo a Pesquisa do Estado do Rio Grande do Sul (FAPERGS) 'PqG' [2057-2551/13-9SIAFEM]
  3. Conselho Nacional de Desenvolvimento Cientifico e Tecnologico (CNPq) [474831/2013-2]

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Motivation: Horizontal transfer of transposable (HTT) elements among eukaryotes was discovered in the mid-1980s. As then, >300 new cases have been described. New findings about HTT are revealing the evolutionary impact of this phenomenon on host genomes. In order to provide an up to date, interactive and expandable database for such events, we developed the HTT-DB database. Results: HTT-DB allows easy access to most of HTT cases reported along with rich information about each case. Moreover, it allows the user to generate tables and graphs based on searches using Transposable elements and/or host species classification and export them in several formats.

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