相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Responses of the Human Gut Escherichia coli Population to Pathogen and Antibiotic Disturbances
Taylor K. S. Richter et al.
MSYSTEMS (2018)
Multi-drug resistant pathogenic bacteria in the gut of young children in Bangladesh
Shirajum Monira et al.
GUT PATHOGENS (2017)
Worldwide Phylogenetic Group Patterns of Escherichia coli from Commensal Human and Wastewater Treatment Plant Isolates
Nancy de Castro Stoppe et al.
FRONTIERS IN MICROBIOLOGY (2017)
Investigating the Relatedness of Enteroinvasive Escherichia coli to Other E. coli and Shigella Isolates by Using Comparative Genomics
Tracy H. Hazen et al.
INFECTION AND IMMUNITY (2016)
The microbiome in early life: implications for health outcomes
Sabrina Tamburini et al.
NATURE MEDICINE (2016)
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2016)
Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability
Moran Yassour et al.
SCIENCE TRANSLATIONAL MEDICINE (2016)
Longitudinal Comparison of Antibiotic Resistance in Diarrheagenic and Non-pathogenic Escherichia coli from Young Tanzanian Children
Jessica C. Seidman et al.
FRONTIERS IN MICROBIOLOGY (2016)
Genomic diversity of EPEC associated with clinical presentations of differing severity
Tracy H. Hazen et al.
NATURE MICROBIOLOGY (2016)
In silico serotyping of E. coli from short read data identifies limited novel O-loci but extensive diversity of O:H serotype combinations within and between pathogenic lineages
Danielle J. Ingle et al.
MICROBIAL GENOMICS (2016)
On the Origin of Species: Factors Shaping the Establishment of Infant's Gut Microbiota
Niels van Best et al.
BIRTH DEFECTS RESEARCH PART C-EMBRYO TODAY-REVIEWS (2015)
Extensive Within-Host Diversity in Fecally Carried Extended-Spectrum-Beta-Lactamase-Producing Escherichia coli Isolates: Implications for Transmission Analyses
N. Stoesser et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2015)
Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data
Katrine G. Joensen et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2015)
Defining the Phylogenomics of Shigella Species: a Pathway to Diagnostics
Jason W. Sahl et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2015)
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events
Vanessa K. Wong et al.
NATURE GENETICS (2015)
Escherichia coli diversity in the lower intestinal tract of humans
David M. Gordon et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2015)
Bacterial Factors Associated with Lethal Outcome of Enteropathogenic Escherichia coli Infection: Genomic Case-Control Studies
Michael S. Donnenberg et al.
PLOS NEGLECTED TROPICAL DISEASES (2015)
Pathogen-specific burdens of community diarrhoea in developing countries: a multisite birth cohort study (MAL-ED)
James A. Platts-Mills et al.
LANCET GLOBAL HEALTH (2015)
Reservoirs of Extraintestinal Pathogenic Escherichia coli
Amee R. Manges et al.
MICROBIOLOGY SPECTRUM (2015)
Microbiologic Methods Utilized in the MAL-ED Cohort Study
Eric Houpt et al.
CLINICAL INFECTIOUS DISEASES (2014)
Escherichia coli sequence type 131: epidemiology and challenges in treatment
Zubair A. Qureshi et al.
EXPERT REVIEW OF ANTI-INFECTIVE THERAPY (2014)
Increased carriage of macrolide-resistant fecal E. coli following mass distribution of azithromycin for trachoma control
Jessica C. Seidman et al.
INTERNATIONAL JOURNAL OF EPIDEMIOLOGY (2014)
Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution
Astrid von Mentzer et al.
NATURE GENETICS (2014)
Analysis of quinolone-resistance in commensal and diarrheagenic Escherichia coli isolates from infants in Lima, Peru
Maria J. Pons et al.
TRANSACTIONS OF THE ROYAL SOCIETY OF TROPICAL MEDICINE AND HYGIENE (2014)
Sex-dependent competitive dominance of phylogenetic group B2 Escherichia coli strains within human hosts
Michaela D. J. Blyton et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2014)
The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes
Jason W. Sahl et al.
PEERJ (2014)
The Comprehensive Antibiotic Resistance Database
Andrew G. McArthur et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2013)
Real-Time PCR for Quantitative Analysis of Human Commensal Escherichia coli Populations Reveals a High Frequency of Subdominant Phylogroups
Mounira Smati et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
The MaSuRCA genome assembler
Aleksey V. Zimin et al.
BIOINFORMATICS (2013)
Mass Distribution of Azithromycin for Trachoma Control Is Associated With Increased Risk of Azithromycin-Resistant Streptococcus pneumoniae Carriage in Young Children 6 Months After Treatment
Christian L. Coles et al.
CLINICAL INFECTIOUS DISEASES (2013)
Recent Advances in Understanding Enteric Pathogenic Escherichia coli
Matthew A. Croxen et al.
CLINICAL MICROBIOLOGY REVIEWS (2013)
Quantitative PCR for Detection of Shigella Improves Ascertainment of Shigella Burden in Children with Moderate-to-Severe Diarrhea in Low-Income Countries
Brianna Lindsay et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2013)
Prevalence of enteroaggregative Escherichia coli and its virulence-related genes in a case-control study among children from north-eastern Brazil
Ila Fernanda Nunes Lima et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2013)
Burden and aetiology of diarrhoeal disease in infants and young children in developing countries (the Global Enteric Multicenter Study, GEMS): a prospective, case-control study
Karen L. Kotloff et al.
LANCET (2013)
Refining the pathovar paradigm via phylogenomics of the attaching and effacing Escherichia coli
Tracy H. Hazen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Genomic Characterization of Enteroaggregative Escherichia coli From Children in Mali
Nadia Boisen et al.
JOURNAL OF INFECTIOUS DISEASES (2012)
Global and regional mortality from 235 causes of death for 20 age groups in 1990 and 2010: a systematic analysis for the Global Burden of Disease Study 2010
Rafael Lozano et al.
LANCET (2012)
Human gut microbiome viewed across age and geography
Tanya Yatsunenko et al.
NATURE (2012)
Mass Distribution of Azithromycin for Trachoma Control Is Associated With Short-term Reduction in Risk of Acute Lower Respiratory Infection in Young Children
Christian L. Coles et al.
PEDIATRIC INFECTIOUS DISEASE JOURNAL (2012)
Association of Mass Treatment with Azithromycin in Trachoma-Endemic Communities with Short-Term Reduced Risk of Diarrhea in Young Children
Christian L. Coles et al.
AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE (2011)
Genomic comparison of multi-drug resistant invasive and colonizing Acinetobacter baumannii isolated from diverse human body sites reveals genomic plasticity
Jason W. Sahl et al.
BMC GENOMICS (2011)
The IGS Standard Operating Procedure for Automated Prokaryotic Annotation
Kevin Galens et al.
STANDARDS IN GENOMIC SCIENCES (2011)
Ergatis: a web interface and scalable software system for bioinformatics workflows
Joshua Orvis et al.
BIOINFORMATICS (2010)
A virulent parent with probiotic progeny: comparative genomics of Escherichia coli strains CFT073, Nissle 1917 and ABU 83972
Rebecca Munk Vejborg et al.
MOLECULAR GENETICS AND GENOMICS (2010)
The population genetics of commensal Escherichia coli
Olivier Tenaillon et al.
NATURE REVIEWS MICROBIOLOGY (2010)
Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths
Marie Touchon et al.
PLOS GENETICS (2009)
Complete Genome Sequence and Comparative Analysis of the Wild-type Commensal Escherichia coli Strain SE11 Isolated from a Healthy Adult
Kenshiro Oshima et al.
DNA RESEARCH (2008)
Characteristics of human intestinal Escherichia coli with changing environments
David Skurnik et al.
ENVIRONMENTAL MICROBIOLOGY (2008)
The pangenome structure of Escherichia coli:: Comparative genomic analysis of E-coli commensal and pathogenic isolates
David A. Rasko et al.
JOURNAL OF BACTERIOLOGY (2008)
Worlds within worlds: evolution of the vertebrate gut microbiota
Ruth E. Ley et al.
NATURE REVIEWS MICROBIOLOGY (2008)
Development of the human infant intestinal microbiota
Chana Palmer et al.
PLOS BIOLOGY (2007)
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Alexandros Stamatakis
BIOINFORMATICS (2006)
Metagenomic analysis of the human distal gut microbiome
Steven R. Gill et al.
SCIENCE (2006)
Sex and virulence in Escherichia coli:: an evolutionary perspective
Thierry Wirth et al.
MOLECULAR MICROBIOLOGY (2006)
Mutation in 23S rRNA associated with macrolide resistance in Neisseria gonorrhoeae
LK Ng et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2002)
The genetic structure of Escherichia coli populations in primary and secondary habitats
DM Gordon et al.
MICROBIOLOGY-SGM (2002)