相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Short communication: Signs of host genetic regulation in the microbiome composition in 2 dairy breeds: Holstein and Brown Swiss
O. Gonzalez-Recio et al.
JOURNAL OF DAIRY SCIENCE (2018)
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
Robert D. Stewart et al.
NATURE COMMUNICATIONS (2018)
Rumen-protected methionine during the peripartal period in dairy cows and its effects on abundance of major species of ruminal bacteria
Mohamed K. Abdelmegeid et al.
JOURNAL OF ANIMAL SCIENCE AND BIOTECHNOLOGY (2018)
Illumina sequencing analysis of the ruminal microbiota in high-yield and low-yield lactating dairy cows
Jinjin Tong et al.
PLOS ONE (2018)
The Structural and Functional Capacity of Ruminal and Cecal Microbiota in Growing Cattle Was Unaffected by Dietary Supplementation of Linseed Oil and Nitrate
Milka Popova et al.
FRONTIERS IN MICROBIOLOGY (2017)
Supplementation with lipid sources alters the ruminal fermentation and duodenal flow of fatty acids in grazing Nellore steers
Isabela Pena Carvalho de Carvalho et al.
ANIMAL FEED SCIENCE AND TECHNOLOGY (2017)
Genetic Determinants of the Gut Microbiome in UK Twins
Julia K. Goodrich et al.
CELL HOST & MICROBE (2016)
Short communication: The effect of an exogenous enzyme with amylolytic activity on gas production and in vitro rumen starch degradability of small and large particles of corn or barley meals
A. Gallo et al.
JOURNAL OF DAIRY SCIENCE (2016)
Bovine Host Genetic Variation Influences Rumen Microbial Methane Production with Best Selection Criterion for Low Methane Emitting and Efficiently Feed Converting Hosts Based on Metagenomic Gene Abundance
Rainer Roehe et al.
PLOS GENETICS (2016)
VSEARCH: a versatile open source tool for metagenomics
Torbjorn Rognes et al.
PEERJ (2016)
Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
Janine Kamke et al.
MICROBIOME (2016)
An evaluation of the accuracy and speed of metagenome analysis tools
Stinus Lindgreen et al.
SCIENTIFIC REPORTS (2016)
Temporal dynamics of the metabolically active rumen bacteria colonizing fresh perennial ryegrass
Sharon A. Huws et al.
FEMS MICROBIOLOGY ECOLOGY (2016)
Distribution and Genetic Diversity of Bacteriocin Gene Clusters in Rumen Microbial Genomes
Analice C. Azevedo et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
Ruminal Bacterial Community Composition in Dairy Cows Is Dynamic over the Course of Two Lactations and Correlates with Feed Efficiency
Kelsea A. Jewell et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
The rumen microbial metagenome associated with high methane production in cattle
R. John Wallace et al.
BMC GENOMICS (2015)
De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units
Sarah L. Westcott et al.
PEERJ (2015)
Metagenomics: Tools and Insights for Analyzing Next-Generation Sequencing Data Derived from Biodiversity Studies
Anastasis Oulas et al.
BIOINFORMATICS AND BIOLOGY INSIGHTS (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
Incorporating heifer feed efficiency in the Australian selection index using genomic selection
O. Gonzalez-Recio et al.
JOURNAL OF DAIRY SCIENCE (2014)
Effect of dietary forage sources on rumen microbiota, rumen fermentation and biogenic amines in dairy cows
Ruiyang Zhang et al.
JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE (2014)
Machine learning methods and predictive ability metrics for genome-wide prediction of complex traits
Oscar Gonzalez-Recio et al.
LIVESTOCK SCIENCE (2014)
Reducing GHG emissions through genetic improvement for feed efficiency: effects on economically important traits and enteric methane production
J. A. Basarab et al.
ANIMAL (2013)
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
James J. Kozich et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Molecular diversity of rumen bacterial communities from tannin-rich and fiber-rich forage fed domestic Sika deer (Cervus nippon) in China
Zhi Peng Li et al.
BMC MICROBIOLOGY (2013)
The effect of changing cow production and fitness traits on net income and greenhouse gas emissions from Australian dairy systems
M. J. Bell et al.
JOURNAL OF DAIRY SCIENCE (2013)
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Christian Quast et al.
NUCLEIC ACIDS RESEARCH (2013)
Metagenomic Predictions: From Microbiome to Complex Health and Environmental Phenotypes in Humans and Cattle
Elizabeth M. Ross et al.
PLOS ONE (2013)
UCHIME improves sensitivity and speed of chimera detection
Robert C. Edgar et al.
BIOINFORMATICS (2011)
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
J. Gregory Caporaso et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Characterization of Variation in Rumen Methanogenic Communities under Different Dietary and Host Feed Efficiency Conditions, as Determined by PCR-Denaturing Gradient Gel Electrophoresis Analysis
Mi Zhou et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
Assessment of the Microbial Ecology of Ruminal Methanogens in Cattle with Different Feed Efficiencies
Mi Zhou et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Genome-assisted prediction of a quantitative trait measured in parents and progeny: application to food conversion rate in chickens
Oscar Gonzalez-Recio et al.
GENETICS SELECTION EVOLUTION (2009)
Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution
Ilana Zilber-Rosenberg et al.
FEMS MICROBIOLOGY REVIEWS (2008)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
UniFrac: a new phylogenetic method for comparing microbial communities
C Lozupone et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2005)