相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Geology of the Yap Trench: new observations from a transect near 10 degrees N from manned submersible Jiaolong
Yaomin Yang et al.
INTERNATIONAL GEOLOGY REVIEW (2018)
Stress response of a marine ammonia-oxidizing archaeon informs physiological status of environmental populations
Wei Qin et al.
ISME JOURNAL (2018)
A dynamic microbial community with high functional redundancy inhabits the cold, oxic subseafloor aquifer
Benjamin J. Tully et al.
ISME JOURNAL (2018)
Comparative genomic inference suggests mixotrophic lifestyle for Thorarchaeota
Yang Liu et al.
ISME JOURNAL (2018)
Vertically distinct microbial communities in the Mariana and Kermadec trenches
Logan M. Peoples et al.
PLOS ONE (2018)
Use of the Jiaolong manned submersible for accurate mapping of deep-sea topography and geomorphology
Tongwei Zhang et al.
SCIENCE CHINA-EARTH SCIENCES (2018)
Topographic and sedimentary features in the Yap subduction zone and their implications for the Caroline Ridge subduction
Dongdong Dong et al.
TECTONOPHYSICS (2018)
Unifying the global phylogeny and environmental distribution of ammonia-oxidising archaea based on amoA genes
Ricardo J. Eloy Alves et al.
NATURE COMMUNICATIONS (2018)
Obtaining high-quality draft genomes from uncultured microbes by cleaning and co-assembly of single-cell amplified genomes
Masato Kogawa et al.
SCIENTIFIC REPORTS (2018)
Depth-Resolved Variations of Cultivable Bacteria and Their Extracellular Enzymes in the Water Column of the New Britain Trench
Qianfeng Liu et al.
FRONTIERS IN MICROBIOLOGY (2018)
Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
Christian M. K. Sieber et al.
NATURE MICROBIOLOGY (2018)
The hadal biosphere: Recent insights and new directions
Rulong Liu et al.
DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY (2018)
KEGG: new perspectives on genomes, pathways, diseases and drugs
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2017)
The metabolic potential of the single cell genomes obtained from the Challenger Deep, Mariana Trench within the candidate superphylum Parcubacteria (OD1)
Rosa Leon-Zayas et al.
ENVIRONMENTAL MICROBIOLOGY (2017)
ModelFinder: fast model selection for accurate phylogenetic estimates
Subha Kalyaanamoorthy et al.
NATURE METHODS (2017)
A new species in the genus Styracaster (Echinodermata: Asteroidea: Porcellanasteridae) from hadal depth of the Yap Trench in the western Pacific
Ruiyan Zhang et al.
ZOOTAXA (2017)
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
Donovan H. Parks et al.
NATURE MICROBIOLOGY (2017)
Co-occurrence of integrase 1, antibiotic and heavy metal resistance genes in municipal wastewater treatment plants
Andrea Di Cesare et al.
WATER RESEARCH (2016)
Genomic and Transcriptomic Resolution of Organic Matter Utilization Among Deep-sea Bacteria in Guaymas Basin Hydrothermal Plumes
Meng Li et al.
FRONTIERS IN MICROBIOLOGY (2016)
Diversity and Metabolic Potentials of Subsurface Crustal Microorganisms from the Western Flank of the Mid-Atlantic Ridge
Xinxu Zhang et al.
FRONTIERS IN MICROBIOLOGY (2016)
Nitrogen Stimulates the Growth of Subsurface Basalt-associated Microorganisms at the Western Flank of the Mid-Atlantic Ridge
Xinxu Zhang et al.
FRONTIERS IN MICROBIOLOGY (2016)
Identification of Free-Living and Particle-Associated Microbial Communities Present in Hadal Regions of the Mariana Trench
Jonathan Tarn et al.
FRONTIERS IN MICROBIOLOGY (2016)
Distribution and Niche Separation of Planktonic Microbial Communities in the Water Columns from the Surface to the Hadal Waters of the Japan Trench under the Eutrophic Ocean
Takuro Nunoura et al.
Frontiers in Microbiology (2016)
Genomic and enzymatic evidence for acetogenesis among multiple lineages of the archaeal phylum Bathyarchaeota widespread in marine sediments
Y. He et al.
NATURE MICROBIOLOGY (2016)
CONTROLS ON TRACE METAL AUTHIGENIC ENRICHMENT IN REDUCING SEDIMENTS: INSIGHTS FROM MODERN OXYGEN-DEFICIENT SETTINGS
Susan H. Little et al.
AMERICAN JOURNAL OF SCIENCE (2015)
Single Cells within the Puerto Rico Trench Suggest Hadal Adaptation of Microbial Lineages
Rosa Leon-Zayas et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
The distribution of benthic biomass in hadal trenches: A modelling approach to investigate the effect of vertical and lateral organic matter transport to the seafloor
Matteo C. Ichino et al.
DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS (2015)
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
Donovan H. Parks et al.
GENOME RESEARCH (2015)
metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data
Johan Bengtsson-Palme et al.
MOLECULAR ECOLOGY RESOURCES (2015)
Hadal biosphere: Insight into the microbial ecosystem in the deepest ocean on Earth
Takuro Nunoura et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea
Meng Li et al.
NATURE COMMUNICATIONS (2015)
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
Dongwan D. Kang et al.
PEERJ (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
The elemental composition of virus particles: implications for marine biogeochemical cycles
Luis F. Jover et al.
NATURE REVIEWS MICROBIOLOGY (2014)
BacMet: antibacterial biocide and metal resistance genes database
Chandan Pal et al.
NUCLEIC ACIDS RESEARCH (2014)
Ammonia-oxidizing archaea use the most energy-efficient aerobic pathway for CO2 fixation
Martin Koenneke et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Thaumarchaeotal Signature Gene Distribution in Sediments of the Northern South China Sea: an Indicator of the Metabolic Intersection of the Marine Carbon, Nitrogen, and Phosphorus Cycles?
Hongyue Dang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Metagenomic analysis of hadopelagic microbial assemblages thriving at the deepest part of Mediterranean Sea, Matapan-Vavilov Deep
Francesco Smedile et al.
ENVIRONMENTAL MICROBIOLOGY (2013)
Archaeal amoA gene diversity points to distinct biogeography of ammonia-oxidizing Crenarchaeota in the ocean
Eva Sintes et al.
ENVIRONMENTAL MICROBIOLOGY (2013)
Ultrafast Approximation for Phylogenetic Bootstrap
Bui Quang Minh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
High rates of microbial carbon turnover in sediments in the deepest oceanic trench on Earth
Ronnie N. Glud et al.
NATURE GEOSCIENCE (2013)
Processes and patterns of oceanic nutrient limitation
C. M. Moore et al.
NATURE GEOSCIENCE (2013)
Evidence for Microbial Carbon and Sulfur Cycling in Deeply Buried Ridge Flank Basalt
Mark A. Lever et al.
SCIENCE (2013)
Metagenome-wide analysis of antibiotic resistance genes in a large cohort of human gut microbiota
Yongfei Hu et al.
NATURE COMMUNICATIONS (2013)
FunGene: the functional gene pipeline and repository
Jordan A. Fish et al.
FRONTIERS IN MICROBIOLOGY (2013)
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
Yu Peng et al.
BIOINFORMATICS (2012)
GenBank
Dennis A. Benson et al.
NUCLEIC ACIDS RESEARCH (2012)
dbCAN: a web resource for automated carbohydrate-active enzyme annotation
Yanbin Yin et al.
NUCLEIC ACIDS RESEARCH (2012)
Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries
Wei Xie et al.
ISME JOURNAL (2011)
Microbial Ecology of the Dark Ocean above, at, and below the Seafloor
Beth N. Orcutt et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2011)
Going Deeper: Metagenome of a Hadopelagic Microbial Community
Emiley A. Eloe et al.
PLOS ONE (2011)
Compositional differences in particle-associated and free-living microbial assemblages from an extreme deep-ocean environment
Emiley A. Eloe et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community
Christopher L. Hemme et al.
ISME JOURNAL (2010)
Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea
C. B. Walker et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Design and analysis of synthetic carbon fixation pathways
Arren Bar-Even et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Hadal trenches: the ecology of the deepest places on Earth
Alan J. Jamieson et al.
TRENDS IN ECOLOGY & EVOLUTION (2010)
The Exiguobacterium genus: biodiversity and biogeography
Tatiana A. Vishnivetskaya et al.
EXTREMOPHILES (2009)
Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria
Willm Martens-Habbena et al.
NATURE (2009)
Complete genome sequence of Nitrosospira multiformis, an ammonia-oxidizing bacterium from the soil environment
Jeanette M. Norton et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Comparative genomics of two ecotypes of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter
Elena Ivars-Martinez et al.
ISME JOURNAL (2008)
Cu complexation by organic ligands in the sub-arctic NW Pacific and Bering Sea
James W. Moffett et al.
DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS (2007)
Diversity of actinomycetes isolated from Challenger Deep sediment (10,898 m) from the Mariana Trench
Wasu Pathom-aree et al.
EXTREMOPHILES (2006)
Deep CTD casts in the Challenger Deep, Mariana Trench
K Taira et al.
JOURNAL OF OCEANOGRAPHY (2005)
Transcriptome and proteome analysis of Bacillus subtilis gene expression in response to superoxide and peroxide stress
J Mostertz et al.
MICROBIOLOGY-SGM (2004)
Peridotites and volcanics from the Yap arc system: implications for tectonics of the southern Philippine Sea Plate
Y Ohara et al.
CHEMICAL GEOLOGY (2002)
Morphology and tectonics of the Yap Trench
T Fujiwara et al.
MARINE GEOPHYSICAL RESEARCH (2000)
分享论文
