相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data
Claudine Medigue et al.
BRIEFINGS IN BIOINFORMATICS (2019)
GenBank
Dennis A. Benson et al.
NUCLEIC ACIDS RESEARCH (2018)
Phylogenomic analyses of a clade within the roseobacter group suggest taxonomic reassignments of species of the genera Aestuariivita, Citreicella, Loktanella, Nautella, Pelagibaca, Ruegeria, Thalassobius, Thiobacimonas and Tropicibacter, and the proposal of six novel genera
Joseph S. Wirth et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2018)
Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
Jongsik Chun et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2018)
High-quality draft genome of the methanotroph &ITMethylovulum&IT &ITpsychrotolerans&IT Str. HV10-M2 isolated from plant material at a high-altitude environment
Alejandro Mateos-Rivera et al.
STANDARDS IN GENOMIC SCIENCES (2018)
Description of Candidatus Methylocucumis oryzae', a novel Type I methanotroph with large cells and pale pink colour, isolated from an Indian rice field
Pranitha S. Pandit et al.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2018)
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
Donovan H. Parks et al.
NATURE BIOTECHNOLOGY (2018)
Genome-Based Taxonomic Classification of the Phylum Actinobacteria
Imen Nouioui et al.
FRONTIERS IN MICROBIOLOGY (2018)
Members of the Genus Methylobacter Are Inferred To Account for the Majority of Aerobic Methane Oxidation in Oxic Soils from a Freshwater Wetland
Garrett J. Smith et al.
MBIO (2018)
Complete Genome Sequence of Methylomonas denitrificans Strain FJG1, an Obligate Aerobic Methanotroph That Can Couple Methane Oxidation with Denitrification
Fabini D. Orata et al.
GENOME ANNOUNCEMENTS (2018)
Genome-based insights into a putative novel Methylomonas species (strain Kb3), isolated from an Indian rice field
Monali C. Rahalkar et al.
GENE REPORTS (2018)
Characterization of the first rice paddy cluster I isolate, Methyloterricola oryzae gen. nov., sp nov and amended description of Methylomagnum ishizawai
Katharina Frindte et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2017)
Crenothrix are major methane consumers in stratified lakes
Kirsten Oswald et al.
ISME JOURNAL (2017)
Uncultivated microbes in need of their own taxonomy
Konstantinos T. Konstantinidis et al.
ISME JOURNAL (2017)
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
Supratim Mukherjee et al.
NATURE BIOTECHNOLOGY (2017)
Benefits of Genomic Insights and CRISPR-Cas Signatures to Monitor Potential Pathogens across Drinking Water Production and Distribution Systems
Ya Zhang et al.
FRONTIERS IN MICROBIOLOGY (2017)
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
Donovan H. Parks et al.
NATURE MICROBIOLOGY (2017)
Phylogenetic analysis of family Neisseriaceae based on genome sequences and description of Populibacter corticis gen. nov., sp nov., a member of the family Neisseriaceae, isolated from symptomatic bark of Populus x euramericana canker
Yong Li et al.
PLOS ONE (2017)
Bradyrhizobium brasilense sp nov., a symbiotic nitrogen-fixing bacterium isolated from Brazilian tropical soils
Elaine Martins da Costa et al.
ARCHIVES OF MICROBIOLOGY (2017)
Reassessment of the taxonomic position of Burkholderia andropogonis and description of Robbsia andropogonis gen. nov., comb. nov.
Lucilene Lopes-Santos et al.
ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2017)
Characterization of clinical and environmental isolates of Vibrio cidicii sp nov., a close relative of Vibrio navarrensis
Fabini D. Orata et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2016)
Methylovulum psychrotolerans sp nov:, a cold-adapted methanotroph from low-temperature terrestrial environments, and emended description of the genus Methylovulum
Igor Y. Oshkin et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2016)
A New Genomics-Driven Taxonomy of Bacteria and Archaea: Are We There Yet?
George M. Garrity
JOURNAL OF CLINICAL MICROBIOLOGY (2016)
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2016)
Phylogenomic re-assessment of the thermophilic genus Geobacillus
Habibu Aliyu et al.
SYSTEMATIC AND APPLIED MICROBIOLOGY (2016)
Genome-Based Taxonomic Classification of Bacteroidetes
Richard L. Hahnke et al.
FRONTIERS IN MICROBIOLOGY (2016)
Draft Genome Sequences of Eight Obligate Methane Oxidizers Occupying Distinct Niches Based on Their Nitrogen Metabolism
Kim Heylen et al.
GENOME ANNOUNCEMENTS (2016)
Methane oxidation coupled to nitrate reduction under hypoxia by the Gammaproteobacterium Methylomonas denitrificans, sp nov type strain FJG1
K. Dimitri Kits et al.
ENVIRONMENTAL MICROBIOLOGY (2015)
Methane as a Resource: Can the Methanotrophs Add Value?
P. J. Strong et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2015)
FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program
Vincent Lefort et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
William B. Whitman et al.
STANDARDS IN GENOMIC SCIENCES (2015)
Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker
Claudia Knief
FRONTIERS IN MICROBIOLOGY (2015)
Genomic Reconstruction of an Uncultured Hydrothermal Vent Gammaproteobacterial Methanotroph (Family Methylothermaceae) Indicates Multiple Adaptations to Oxygen Limitation
Connor T. Skennerton et al.
FRONTIERS IN MICROBIOLOGY (2015)
Microbial taxonomy in the post-genomic era: Rebuilding from scratch?
Cristiane C. Thompson et al.
ARCHIVES OF MICROBIOLOGY (2015)
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink et al.
NATURE METHODS (2015)
Draft Genome Sequences of Gammaproteobacterial Methanotrophs Isolated from Lake Washington Sediment
Marina G. Kalyuzhnaya et al.
GENOME ANNOUNCEMENTS (2015)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Highly parallelized inference of large genome-based phylogenies
Jan P. Meier-Kolthoff et al.
CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE (2014)
Methylomarinovum caldicuralii gen. nov., sp nov., a moderately thermophilic methanotroph isolated from a shallow submarine hydrothermal system, and proposal of the family Methylothermaceae fam. nov.
Hisako Hirayama et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2014)
Methylomonas lenta sp nov., a methanotroph isolated from manure and a denitrification tank
Sven Hoefman et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2014)
Integrating genomics into the taxonomy and systematics of the Bacteria and Archaea
Jongsik Chun et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2014)
Taxonomic use of DNA G plus C content and DNA-DNA hybridization in the genomic age
Jan P. Meier-Kolthoff et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2014)
A Proposed Genus Boundary for the Prokaryotes Based on Genomic Insights
Qi-Long Qin et al.
JOURNAL OF BACTERIOLOGY (2014)
LPSN-list of prokaryotic names with standing in nomenclature
Aidan C. Parte
NUCLEIC ACIDS RESEARCH (2014)
RefSeq microbial genomes database: new representation and annotation strategy
Tatiana Tatusova et al.
NUCLEIC ACIDS RESEARCH (2014)
MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences
Chengwei Luo et al.
NUCLEIC ACIDS RESEARCH (2014)
Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains
Nikos C. Kyrpides et al.
PLOS BIOLOGY (2014)
Genome sequence-based species delimitation with confidence intervals and improved distance functions
Jan P. Meier-Kolthoff et al.
BMC BIOINFORMATICS (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
Matthew Kearse et al.
BIOINFORMATICS (2012)
Prokaryotic taxonomy in the sequencing era - the polyphasic approach revisited
Peter Kaempfer et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Methylomonas koyamae sp nov., a type I methane-oxidizing bacterium from floodwater of a rice paddy field
Takuya Ogiso et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2012)
Methylovulum miyakonense gen. nov., sp. nov., a type I methanotroph isolated from forest soil
Hiroyuki Iguchi et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2011)
Complete Genome Sequence of the Aerobic Marine Methanotroph Methylomonas methanica MC09
Rich Boden et al.
JOURNAL OF BACTERIOLOGY (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Notes on the characterization of prokaryote strains for taxonomic purposes
B. J. Tindall et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2010)
Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison
Alexander F. Auch et al.
STANDARDS IN GENOMIC SCIENCES (2010)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
Dongying Wu et al.
NATURE (2009)
Shifting the genomic gold standard for the prokaryotic species definition
Michael Richter et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Classification of halo(alkali)philic and halo(alkali)tolerant methanotrophs provisionally assigned to the genera Methylomicrobium and Methylobacter and emended description of the genus Methylomicrobium
Marina G. Kalyuzhnaya et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2008)
Biogeography: An emerging cornerstone for understanding prokaryotic diversity, ecology, and evolution
Alban Ramette et al.
MICROBIAL ECOLOGY (2007)
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities
Johan Goris et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2007)
Clonothrix fusca Roze 1896, a filamentous, sheathed, methanotrophic gamma-proteobacterium
Giovanni Vigliotta et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Cohn's Crenothrix is a filamentous methane oxidizer with an unusual methane monooxygenase
K Stoecker et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Methylobacter tundripaludum sp nov., a methane-oxidizing bacterium from Arctic wetland soil on the Svalbard islands, Norway (78 degrees N)
I Wartiainen et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2006)
Methylosarcina lacus sp nov., a methanotroph from Lake Washington, Seattle, USA, and emended description of the genus Methylosarcina
MG Kalyuzhnaya et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2005)
Towards a genome-based taxonomy for prokaryotes
KT Konstantinidis et al.
JOURNAL OF BACTERIOLOGY (2005)
Methylohalobius crimeensis gen. nov., sp. nov., a moderately halophilic, methanotrophic bacterium isolated from hypersaline lakes of Crimea
J Heyer et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2005)
Whole-genome prokaryotic phylogeny
SR Henz et al.
BIOINFORMATICS (2005)
Taxonomic characterization of new alkaliphilic and alkalitolerant methanotrophs from soda lakes of the Southeastern Transbaikal region and description of Methylomicrobium buryatense sp.nov.
M Kaluzhnaya et al.
SYSTEMATIC AND APPLIED MICROBIOLOGY (2001)
Methylosarcina fibrata gen. nov., sp nov and Methylosarcina quisquiliarum sp nov., novel type I methanotrophs
MG Wise et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2001)
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
J Castresana
MOLECULAR BIOLOGY AND EVOLUTION (2000)
分享论文
