期刊
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
卷 115, 期 42, 页码 10660-10665出版社
NATL ACAD SCIENCES
DOI: 10.1073/pnas.1812856115
关键词
context-dependent; DNA distortion; Mg2+; Mn2+; Ca2+
资金
- National Institutes of Health (NIH) [DK036146]
- NIH [R01 CA210072]
- NATIONAL CANCER INSTITUTE [R01CA210072] Funding Source: NIH RePORTER
Oxidatively induced DNA lesions 8,5'-cyclopurine-2'-deoxynucleosides (cdPus) are prevalent and cytotoxic by impeding DNA replication and transcription. Both the 5'R- and 5'S-diastereomers of cdPu can be removed by nucleotide excision repair; however, the 5'S-cdPu is more resistant to repair than the 5'R counterpart. Here, we report the crystal structures of human polymerase (Pol) eta bypassing 5'S-8,5'-cyclo-2'-deoxyadenosine (cdA) in insertion and the following two extension steps. The cdA-containing DNA structures vary in response to the protein environment. Supported by the molecular splint of Pol eta, the structure of 5'S-cdA at 1.75-angstrom resolution reveals that the backbone is pinched toward the minor groove and the adenine base is tilted. In the templating position, the cdA takes up the extra space usually reserved for the thymine dimer, and dTTP is efficiently incorporated by Pol eta in the presence of Mn2+. Rigid distortions of the DNA duplex by cdA, however, prevent normal base pairing and hinder immediate primer extension by Pol eta. Our results provide structural insights into the strong replication blockage effect and the mutagenic property of the cdPu lesions in cells.
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