相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Environmental drivers and genomic architecture of trait differentiation in fire-adapted Banksia attenuata ecotypes
Tianhua He et al.
JOURNAL OF INTEGRATIVE PLANT BIOLOGY (2019)
Chromatin-based mechanisms of temperature memory in plants
Thomas Friedrich et al.
PLANT CELL AND ENVIRONMENT (2019)
Evolutionary Epigenomics of Retrotransposon-Mediated Methylation Spreading in Rice
Jae Young Choi et al.
MOLECULAR BIOLOGY AND EVOLUTION (2018)
Profiling of Accessible Chromatin Regions across Multiple Plant Species and Cell Types Reveals Common Gene Regulatory Principles and New Control Modules
Kelsey A. Maher et al.
PLANT CELL (2018)
Transgenerational stress-adaption: an opportunity for ecological epigenetics
Arne Weinhold
PLANT CELL REPORTS (2018)
Plant small RNAs: the essential epigenetic regulators of gene expression for salt-stress responses and tolerance
Vinay Kumar et al.
PLANT CELL REPORTS (2018)
Two-stage identification of SNP effects on dynamic poplar growth
Jingyuan Liu et al.
PLANT JOURNAL (2018)
Piecing together cis-regulatory networks: insights from epigenomics studies in plants
Shao-shan C. Huang et al.
WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE (2018)
Genomic Prediction and Association Mapping of Curd-Related Traits in Gene Bank Accessions of Cauliflower
Patrick Thorwarth et al.
G3-GENES GENOMES GENETICS (2018)
Transgenerational epigenetics: Inheritance of global cytosine methylation and methylation-related epigenetic markers in the shrub Lavandula latifolia
Carlos M. Herrera et al.
AMERICAN JOURNAL OF BOTANY (2018)
Dissection of complicate genetic architecture and breeding perspective of cottonseed traits by genome-wide association study
Xiongming Du et al.
BMC GENOMICS (2018)
Rice nucleosome patterns undergo remodeling coincident with stress-induced gene expression
Qi Zhang et al.
BMC GENOMICS (2018)
Genome-wide association of yield traits in a nested association mapping population of barley reveals new gene diversity for future breeding
Rajiv Sharma et al.
JOURNAL OF EXPERIMENTAL BOTANY (2018)
Genome-wide association mapping in Arabidopsis identifies novel genes underlying quantitative disease resistance to Alternaria brassicae
Sivasubramanian Rajarammohan et al.
MOLECULAR PLANT PATHOLOGY (2018)
Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits
Xiongming Du et al.
NATURE GENETICS (2018)
Ecological genomics of variation in bud-break phenology and mechanisms of response to climate warming in Populus trichocarpa
Athena D. McKown et al.
NEW PHYTOLOGIST (2018)
Genome-wide association and gene validation studies for early root vigour to improve direct seeding of rice
Fanmiao Wang et al.
PLANT CELL AND ENVIRONMENT (2018)
Changes in chromatin accessibility between Arabidopsis stem cells and mesophyll cells illuminate cell type-specific transcription factor networks
Paja Sijacic et al.
PLANT JOURNAL (2018)
Asymmetrical changes of gene expression, small RNAs and chromatin in two resynthesized wheat allotetraploids
Wu Jiao et al.
PLANT JOURNAL (2018)
Comparative epigenomics reveals evolution of duplicated genes in potato and tomato
Lin Wang et al.
PLANT JOURNAL (2018)
Molecular diversity and landscape genomics of the crop wild relative Triticum urartu across the Fertile Crescent
Alice Brunazzi et al.
PLANT JOURNAL (2018)
Natural genetic variation shapes root system responses to phytohormones in Arabidopsis
Daniela Ristova et al.
PLANT JOURNAL (2018)
Coexpression network revealing the plasticity and robustness of population transcriptome during the initial stage of domesticating energy crop Miscanthus lutarioriparius
Shilai Xing et al.
PLANT MOLECULAR BIOLOGY (2018)
Large-scale comparative epigenomics reveals hierarchical regulation of non-CG methylation in Arabidopsis
Yu Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Transcriptome landscape of a bacterial pathogen under plant immunity
Tatsuya Nobori et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Two-way mixed-effects methods for joint association analysis using both host and pathogen genomes
Miaoyan Wang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Genome-wide association study dissects yield components associated with low-phosphorus stress tolerance in maize
Cheng Xu et al.
THEORETICAL AND APPLIED GENETICS (2018)
Translating High-Throughput Phenotyping into Genetic Gain
Jose Luis Araus et al.
TRENDS IN PLANT SCIENCE (2018)
Absence of warmth permits epigenetic memory of winter in Arabidopsis
Jo Hepworth et al.
NATURE COMMUNICATIONS (2018)
Ecology and genomics of an important crop wild relative as a prelude to agricultural innovation
Eric J. B. von Wettberg et al.
NATURE COMMUNICATIONS (2018)
Genome-wide association mapping and genomic prediction for CBSD resistance in Manihot esculenta
Siraj Ismail Kayondo et al.
SCIENTIFIC REPORTS (2018)
Comparative transcriptome analysis of field- and chamber-grown samples of Colobanthus quitensis (Kunth) Bartl, an Antarctic flowering plant
Sung Mi Cho et al.
SCIENTIFIC REPORTS (2018)
Epigenetic population differentiation in field- and common garden-grown Scabiosa columbaria plants
Maartje P. Groot et al.
ECOLOGY AND EVOLUTION (2018)
Molecular Mechanisms of Acclimatization to Phosphorus Starvation and Recovery Underlying Full-Length Transcriptome Profiling in Barley (Hordeum vulgare L.)
Panrong Ren et al.
FRONTIERS IN PLANT SCIENCE (2018)
Functional Characterization of a Flavonoid Glycosyltransferase in Sweet Orange (Citrus sinensis)
Xiaogang Liu et al.
FRONTIERS IN PLANT SCIENCE (2018)
Mapping of HKT1;5 Gene in Barley Using GWAS Approach and Its Implication in Salt Tolerance Mechanism
Khaled M. Hazzouri et al.
FRONTIERS IN PLANT SCIENCE (2018)
Genome-Wide Association Studies and Comparison of Models and Cross-Validation Strategies for Genomic Prediction of Quality Traits in Advanced Winter Wheat Breeding Lines
Peter S. Kristensen et al.
FRONTIERS IN PLANT SCIENCE (2018)
Microbiome and ecotypic adaption of Holcus lanatus (L.) to extremes of its soil pH range, investigated through transcriptome sequencing
Ellen Young et al.
MICROBIOME (2018)
Gene regulatory divergence between locally adapted ecotypes in their native habitats
Billie A. Gould et al.
MOLECULAR ECOLOGY (2018)
Loci and natural alleles underlying robust roots and adaptive domestication of upland ecotype rice in aerobic conditions
Yan Zhao et al.
PLOS GENETICS (2018)
The molecular genetic basis of herbivory between butterflies and their host plants
Sumitha Nallu et al.
NATURE ECOLOGY & EVOLUTION (2018)
Two genetic changes in cis-regulatory elements caused evolution of petal spot position in Clarkia
Peng Jiang et al.
NATURE PLANTS (2018)
Genetic Architecture of Soybean Yield and Agronomic Traits
Brian W. Diers et al.
G3-GENES GENOMES GENETICS (2018)
Genome-wide association analysis reveals distinct genetic architectures for single and combined stress responses in Arabidopsis thaliana
Nelson H. Davila Olivas et al.
NEW PHYTOLOGIST (2017)
Genetic architecture of plant stress resistance: multi-trait genome-wide association mapping
Manus P. M. Thoen et al.
NEW PHYTOLOGIST (2017)
Regional heritability mapping and genome-wide association identify loci for complex growth, wood and disease resistance traits in Eucalyptus
Rafael Tassinari Resende et al.
NEW PHYTOLOGIST (2017)
Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes
Zefu Lu et al.
NUCLEIC ACIDS RESEARCH (2017)
Transcriptomic characterization of candidate genes responsive to salt tolerance of Miscanthus energy crops
Zhihong Song et al.
GLOBAL CHANGE BIOLOGY BIOENERGY (2017)
The Genomic Architecture of Flowering Time Varies Across Space and Time in Mimulus guttatus
Patrick J. Monnahan et al.
GENETICS (2017)
Getting back to nature: a reality check for experiments in controlled environments
Maria Grazia Annunziata et al.
JOURNAL OF EXPERIMENTAL BOTANY (2017)
The emergence of the hyperinvasive vine, Mikania micrantha (Asteraceae), via admixture and founder events inferred from population transcriptomics
Ming Yang et al.
MOLECULAR ECOLOGY (2017)
Natural variation in life history strategy of Arabidopsis thaliana determines stress responses to drought and insects of different feeding guilds
Nelson H. Davila Olivas et al.
MOLECULAR ECOLOGY (2017)
Population transcriptomic characterization of the genetic and expression variation of a candidate progenitor of Miscanthus energy crops
Juan Yan et al.
MOLECULAR ECOLOGY (2017)
Comparative Transcriptome Analysis Reveals Adaptive Evolution of Notopterygium incisum and Notopterygium franchetii, Two High-Alpine Herbal Species Endemic to China
Yun Jia et al.
MOLECULES (2017)
Genomic analyses in cotton identify signatures of selection and loci associated with fiber quality and yield traits
Lei Fang et al.
NATURE GENETICS (2017)
A study of allelic diversity underlying flowering-time adaptation in maize landraces
J. Alberto Romero Navarro et al.
NATURE GENETICS (2017)
High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development
Nicolas Daccord et al.
NATURE GENETICS (2017)
Exploiting induced and natural epigenetic variation for crop improvement
Nathan M. Springer et al.
NATURE REVIEWS GENETICS (2017)
Novel Loci Underlie Natural Variation in Vitamin E Levels in Maize Grain
Christine H. Diepenbrock et al.
PLANT CELL (2017)
The Molecular Dialog between Flowering Plant Reproductive Partners Defined by SNP-Informed RNA-Sequencing
Alexander R. Leydon et al.
PLANT CELL (2017)
Domestication rewired gene expression and nucleotide diversity patterns in tomato
Christopher Sauvage et al.
PLANT JOURNAL (2017)
Seasonal below-ground metabolism in switchgrass
Nathan A. Palmer et al.
PLANT JOURNAL (2017)
A genome-wide association study of 23 agronomic traits in Chinese wheat landraces
Yaxi Liu et al.
PLANT JOURNAL (2017)
Transcriptome analysis of the Brassica napus-Leptosphaeria maculans pathosystem identifies receptor, signaling and structural genes underlying plant resistance
Michael G. Becker et al.
PLANT JOURNAL (2017)
Transcriptome Profiling of Wheat Inflorescence Development from Spikelet Initiation to Floral Patterning Identified Stage-Specific Regulatory Genes
Nan Feng et al.
PLANT PHYSIOLOGY (2017)
Topological features of a gene co-expression network predict patterns of natural diversity in environmental response
David L. Des Marais et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2017)
Epigenetics for Plant Improvement: Current Knowledge and Modeling Avenues
Philippe Gallusci et al.
TRENDS IN PLANT SCIENCE (2017)
Integrated DNA methylome and transcriptome analysis reveals the ethylene-induced flowering pathway genes in pineapple
Jiabin Wang et al.
SCIENTIFIC REPORTS (2017)
Transgenerational epimutations induced by multi-generation drought imposition mediate rice plant's adaptation to drought condition
Xiaoguo Zheng et al.
SCIENTIFIC REPORTS (2017)
Genetic Architecture of a Rice Nested Association Mapping Population
Christopher A. Fragoso et al.
G3-GENES GENOMES GENETICS (2017)
Gene co-expression network connectivity is an important determinant of selective constraint
Niklas Mahler et al.
PLOS GENETICS (2017)
Genome-Wide Association Mapping of Flowering and Ripening Periods in Apple
Jorge Urrestarazu et al.
FRONTIERS IN PLANT SCIENCE (2017)
Comparative Analysis of Transcriptomes in Rhizophoraceae Provides Insights into the Origin and Adaptive Evolution of Mangrove Plants in Intertidal Environments
Wuxia Guo et al.
FRONTIERS IN PLANT SCIENCE (2017)
The Genomic Architecture of Flowering Time Varies Across Space and Time in Mimulus guttatus
Patrick J. Monnahan et al.
GENETICS (2017)
High altitude population of Arabidopsis thaliana is more plastic and adaptive under common garden than controlled condition
Akanksha Singh et al.
BMC ECOLOGY (2017)
Young inversion with multiple linked QTLs under selection in a hybrid zone
Cheng-Ruei Lee et al.
NATURE ECOLOGY & EVOLUTION (2017)
Field-based high throughput phenotyping rapidly identifies genomic regions controlling yield components in rice
Paul Tanger et al.
SCIENTIFIC REPORTS (2017)
Transcriptomic insight into terpenoid and carbazole alkaloid biosynthesis, and functional characterization of two terpene synthases in curry tree (Murraya koenigii)
Seema Meena et al.
SCIENTIFIC REPORTS (2017)
A systems approach to a spatio-temporal understanding of the drought stress response in maize
Zhenyan Miao et al.
SCIENTIFIC REPORTS (2017)
Genome-wide association study Identified multiple Genetic Loci on Chilling Resistance During Germination in Maize
Guanghui Hu et al.
SCIENTIFIC REPORTS (2017)
Genome-wide association study and genomic prediction in citrus: Potential of genomics-assisted breeding for fruit quality traits
Mai F. Minamikawa et al.
SCIENTIFIC REPORTS (2017)
Genome-wide and gene-based association mapping for rice eating and cooking characteristics and protein content
Xiaoqian Wang et al.
SCIENTIFIC REPORTS (2017)
Substantial contribution of genetic variation in the expression of transcription factors to phenotypic variation revealed by eRD-GWAS
Hung-ying Lin et al.
GENOME BIOLOGY (2017)
Differentiated transcriptional signatures in the maize landraces of Chiapas, Mexico
Matthew A. Kost et al.
BMC GENOMICS (2017)
Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean
Chao Fang et al.
GENOME BIOLOGY (2017)
Epigenetic and chromatin-based mechanisms in environmental stress adaptation and stress memory in plants
Jorn Laemke et al.
GENOME BIOLOGY (2017)
Identifying targets and agents of selection: innovative methods to evaluate the processes that contribute to local adaptation
Susana M. Wadgymar et al.
METHODS IN ECOLOGY AND EVOLUTION (2017)
Spatially resolved transcriptome profiling in model plant species
Stefania Giacomello et al.
NATURE PLANTS (2017)
The causes and consequences of DNA methylome variation in plants
Danelle K. Seymour et al.
CURRENT OPINION IN PLANT BIOLOGY (2017)
Leaf transcriptome analysis of a subtropical evergreen broadleaf plant, wild oil-tea camellia (Camellia oleifera), revealing candidate genes for cold acclimation
Jiaming Chen et al.
BMC GENOMICS (2017)
Molecular phenology in plants: innatura systems biology for the comprehensive understanding of seasonal responses under natural environments
Hiroshi Kudoh
NEW PHYTOLOGIST (2016)
Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses
Pankaj Barah et al.
NUCLEIC ACIDS RESEARCH (2016)
Target Enrichment Improves Mapping of Complex Traits by Deep Sequencing
Jianjun Guo et al.
G3-GENES GENOMES GENETICS (2016)
From the laboratory to the field: assaying histone methylation at FLOWERING LOCUS C in naturally growing Arabidopsis halleri
Haruki Nishio et al.
GENES & GENETIC SYSTEMS (2016)
Plant adaptation or acclimation to rising CO2? Insight from first multigenerational RNA-Seq transcriptome
Alexander Watson-Lazowski et al.
GLOBAL CHANGE BIOLOGY (2016)
Modulation of R-gene expression across environments
Alice MacQueen et al.
JOURNAL OF EXPERIMENTAL BOTANY (2016)
Photosynthetic response to fluctuating environments and photoprotective strategies under abiotic stress
Wataru Yamori
JOURNAL OF PLANT RESEARCH (2016)
Next-generation biology: Sequencing and data analysis approaches for non-model organisms
Rute R. da Fonseca et al.
MARINE GENOMICS (2016)
Extreme QTL mapping of germination speed in Arabidopsis thaliana
Wei Yuan et al.
MOLECULAR ECOLOGY (2016)
Rapid genome-wide evolution in Brassica rapa populations following drought revealed by sequencing of ancestral and descendant gene pools
Steven J. Franks et al.
MOLECULAR ECOLOGY (2016)
Identification of Regulatory DNA Elements Using Genome-wide Mapping of DNase I Hypersensitive Sites during Tomato Fruit Development
Zhengkun Qiu et al.
MOLECULAR PLANT (2016)
Bacteria establish an aqueous living space in plants crucial for virulence
Xiu-Fang Xin et al.
NATURE (2016)
Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation
Joanne Russell et al.
NATURE GENETICS (2016)
Domestication history and geographical adaptation inferred from a SNP map of African rice
Rachel S. Meyer et al.
NATURE GENETICS (2016)
Association mapping of leaf traits in spinach (Spinacia oleracea L.)
Jianbing Ma et al.
PLANT BREEDING (2016)
EGRINs (Environmental Gene Regulatory Influence Networks) in Rice That Function in the Response to Water Deficit, High Temperature, and Agricultural Environments
Olivia Wilkins et al.
PLANT CELL (2016)
Molecular, genetic and evolutionary analysis of a paracentric inversion in Arabidopsis thaliana
Paul Fransz et al.
PLANT JOURNAL (2016)
Transcriptome and Degradome Sequencing Reveals Dormancy Mechanisms of Cunninghamia lanceolata Seeds
Dechang Cao et al.
PLANT PHYSIOLOGY (2016)
Nested Association Mapping of Stem Rust Resistance in Wheat Using Genotyping by Sequencing
Prabin Bajgain et al.
PLOS ONE (2016)
Predicting the evolutionary dynamics of seasonal adaptation to novel climates in Arabidopsis thaliana
Alexandre Fournier-Level et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Mobile small RNAs regulate genome-wide DNA methylation
Mathew G. Lewsey et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Open chromatin reveals the functional maize genome
Eli Rodgers-Melnick et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
DNA methylome of the 20-gigabase Norway spruce genome
Israel Ausin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
The Power of Natural Variation for Model Organism Biology
Audrey P. Gasch et al.
TRENDS IN GENETICS (2016)
Open access resources for genome-wide association mapping in rice
Susan R. McCouch et al.
NATURE COMMUNICATIONS (2016)
Dissection of genetic architecture of rice plant height and heading date by multiple-strategy-based association studies
Liyuan Zhou et al.
SCIENTIFIC REPORTS (2016)
High light intensity plays a major role in emergence of population level variation in Arabidopsis thaliana along an altitudinal gradient
Antariksh Tyagi et al.
SCIENTIFIC REPORTS (2016)
Environmental Association Analyses Identify Candidates for Abiotic Stress Tolerance in Glycine soja, the Wild Progenitor of Cultivated Soybeans
Justin E. Anderson et al.
G3-GENES GENOMES GENETICS (2016)
Metatranscriptomic Study of Common and Host-Specific Patterns of Gene Expression between Pines and Their Symbiotic Ectomycorrhizal Fungi in the Genus Suillus
Hui-Ling Liao et al.
PLOS GENETICS (2016)
Multiple alleles at a single locus control seed dormancy in Swedish Arabidopsis
Envel Kerdaffrec et al.
ELIFE (2016)
Using Transcriptomics to Identify Differential Gene Expression in Response to Salinity among Australian Phragmites australis Clones
Gareth D. Holmes et al.
FRONTIERS IN PLANT SCIENCE (2016)
Phenotypic variation and differentiated gene expression of Australian plants in response to declining rainfall
Haylee D'Agui et al.
ROYAL SOCIETY OPEN SCIENCE (2016)
Unmanned Aerial Vehicles for High-Throughput Phenotyping and Agronomic Research
Yeyin Shi et al.
PLOS ONE (2016)
Population transcriptomics uncovers the regulation of gene expression variation in adaptation to changing environment
Qin Xu et al.
SCIENTIFIC REPORTS (2016)
Transcriptome analyses provide insights into the phylogeny and adaptive evolution of the mangrove fern genus Acrostichum
Zhang Zhang et al.
SCIENTIFIC REPORTS (2016)
RNA-Seq reveals virus-virus and virus-plant interactions in nature
Mari Kamitani et al.
FEMS MICROBIOLOGY ECOLOGY (2016)
Widespread natural variation of DNA methylation within angiosperms
Chad E. Niederhuth et al.
GENOME BIOLOGY (2016)
Intensifying drought eliminates the expected benefits of elevated carbon dioxide for soybean
Sharon B. Gray et al.
NATURE PLANTS (2016)
Transcriptome analysis of the Holly mangrove Acanthus ilicifolius and its terrestrial relative, Acanthus leucostachyus, provides insights into adaptation to intertidal zones
Yuchen Yang et al.
BMC GENOMICS (2015)
Modelling the genetic architecture of flowering time control in barley through nested association mapping
Andreas Maurer et al.
BMC GENOMICS (2015)
Prediction of Plant Height in Arabidopsis thaliana Using DNA Methylation Data
Yaodong Hu et al.
GENETICS (2015)
Determinants of nucleosome positioning and their influence on plant gene expression
Ming-Jung Liu et al.
GENOME RESEARCH (2015)
LeasyScan: a novel concept combining 3D imaging and lysimetry for high-throughput phenotyping of traits controlling plant water budget
Vincent Vadez et al.
JOURNAL OF EXPERIMENTAL BOTANY (2015)
Ten years of transcriptomics in wild populations: what have we learned about their ecology and evolution?
Mariano Alvarez et al.
MOLECULAR ECOLOGY (2015)
Genomic, Transcriptomic, and Phenomic Variation Reveals the Complex Adaptation of Modern Maize Breeding
Haijun Liu et al.
MOLECULAR PLANT (2015)
Genome-Wide Nucleosome Occupancy and Positioning and Their Impact on Gene Expression and Evolution in Plants
Tao Zhang et al.
PLANT PHYSIOLOGY (2015)
Coselected genes determine adaptive variation in herbivore resistance throughout the native range of Arabidopsis thaliana
Benjamin Brachi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Flux Control in a Defense Pathway in Arabidopsis thaliana Is Robust to Environmental Perturbations and Controls Variation in Adaptive Traits
Carrie F. Olson-Manning et al.
G3-GENES GENOMES GENETICS (2015)
Genome-Wide Association Analysis of Adaptation Using Environmentally Predicted Traits
Joost van Heerwaarden et al.
PLOS GENETICS (2015)
Multiple abiotic stimuli are integrated in the regulation of rice gene expression under field conditions
Anne Plessis et al.
ELIFE (2015)
Next Generation Sequencing Technologies: The Doorway to the Unexplored Genomics of Non-Model Plants
Chibuikem I. N. Unamba et al.
FRONTIERS IN PLANT SCIENCE (2015)
Prediction of Plant Height in Arabidopsis thaliana Using DNA Methylation Data
Yaodong Hu et al.
GENETICS (2015)
Field pathogenomics reveals the emergence of a diverse wheat yellow rust population
Amelia Hubbard et al.
GENOME BIOLOGY (2015)
Genome-environment associations in sorghum landraces predict adaptive traits
Jesse R. Lasky et al.
SCIENCE ADVANCES (2015)
Transcriptome analysis reveals diversified adaptation of Stipa purpurea along a drought gradient on the Tibetan Plateau
Yunqiang Yang et al.
FUNCTIONAL & INTEGRATIVE GENOMICS (2015)
Targeting environmental adaptation in the monocot model Brachypodium distachyon: a multi-faceted approach
Matteo Dell'Acqua et al.
BMC GENOMICS (2014)
Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative
Maggie R. Wagner et al.
ECOLOGY LETTERS (2014)
Genome-wide association studies and prediction of 17 traits related to phenology, biomass and cell wall composition in the energy grass Miscanthus sinensis
Gancho T. Slavov et al.
NEW PHYTOLOGIST (2014)
Natural Variation in Abiotic Stress Responsive Gene Expression and Local Adaptation to Climate in Arabidopsis thaliana
Jesse R. Lasky et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Abiotic and biotic stress combinations
Nobuhiro Suzuki et al.
NEW PHYTOLOGIST (2014)
Epigenetics: Beyond Chromatin Modifications and Complex Genetic Regulation
Steven R. Eichten et al.
PLANT PHYSIOLOGY (2014)
Mapping the Epigenetic Basis of Complex Traits
Sandra Cortijo et al.
SCIENCE (2014)
Get your high-quality low-cost genome sequence
Luigi Faino et al.
TRENDS IN PLANT SCIENCE (2014)
Genome-wide association study of Arabidopsis thaliana leaf microbial community
Matthew W. Horton et al.
NATURE COMMUNICATIONS (2014)
Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice
Wanneng Yang et al.
NATURE COMMUNICATIONS (2014)
Association Mapping across Numerous Traits Reveals Patterns of Functional Variation in Maize
Jason G. Wallace et al.
PLOS GENETICS (2014)
Genotype-by-Environment Interaction and Plasticity: Exploring Genomic Responses of Plants to the Abiotic Environment
David L. Des Marais et al.
ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 44 (2013)
Screening of rice Genebank germplasm for yield and selection of new drought tolerance donors
Rolando O. Torres et al.
FIELD CROPS RESEARCH (2013)
Comparative metatranscriptomics reveals kingdom level changes in the rhizosphere microbiome of plants
Thomas R. Turner et al.
ISME JOURNAL (2013)
Evolution of Flux Control in the Glucosinolate Pathway in Arabidopsis thaliana
Carrie F. Olson-Manning et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Mass flowering of the tropical tree Shorea beccariana was preceded by expression changes in flowering and drought-responsive genes
Masaki J. Kobayashi et al.
MOLECULAR ECOLOGY (2013)
Are long-lived trees poised for evolutionary change? Single locus effects in the evolution of gene expression networks in spruce
Jukka-Pekka Verta et al.
MOLECULAR ECOLOGY (2013)
Single-base resolution methylomes of tomato fruit development reveal epigenome modifications associated with ripening
Silin Zhong et al.
NATURE BIOTECHNOLOGY (2013)
A haplotype map of genomic variations and genome-wide association studies of agronomic traits in foxtail millet (Setaria italica)
Guanqing Jia et al.
NATURE GENETICS (2013)
QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations
Hiroki Takagi et al.
PLANT JOURNAL (2013)
The advantages and limitations of trait analysis with GWAS: a review
Arthur Korte et al.
PLANT METHODS (2013)
Identification of Genes Involved in the Response of Arabidopsis to Simultaneous Biotic and Abiotic Stresses
Nicky J. Atkinson et al.
PLANT PHYSIOLOGY (2013)
Simultaneous Application of Heat, Drought, and Virus to Arabidopsis Plants Reveals Significant Shifts in Signaling Networks
Christian Maximilian Prasch et al.
PLANT PHYSIOLOGY (2013)
Transcriptome Responses to Combinations of Stresses in Arabidopsis
Simon Rasmussen et al.
PLANT PHYSIOLOGY (2013)
The impact of climate change on plant epigenomes
Qiong A. Liu
TRENDS IN GENETICS (2013)
A Genome-Wide Association Study Reveals Genes Associated with Fusarium Ear Rot Resistance in a Maize Core Diversity Panel
Charles T. Zila et al.
G3-GENES GENOMES GENETICS (2013)
Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression
Xin Li et al.
BMC GENOMICS (2012)
Transcriptomic and metabolomic analysis of Yukon Thellungiella plants grown in cabinets and their natural habitat show phenotypic plasticity
David R. Guevara et al.
BMC PLANT BIOLOGY (2012)
Arabidopsis plants grown in the field and climate chambers significantly differ in leaf morphology and photosystem components
Yogesh Mishra et al.
BMC PLANT BIOLOGY (2012)
Deciphering and Prediction of Transcriptome Dynamics under Fluctuating Field Conditions
Atsushi J. Nagano et al.
CELL (2012)
High-resolution mapping of open chromatin in the rice genome
Wenli Zhang et al.
GENOME RESEARCH (2012)
Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm
Xuehui Huang et al.
NATURE GENETICS (2012)
Genome-wide genetic changes during modern breeding of maize
Yinping Jiao et al.
NATURE GENETICS (2012)
Genome-Wide Identification of Regulatory DNA Elements and Protein-Binding Footprints Using Signatures of Open Chromatin in Arabidopsis
Wenli Zhang et al.
PLANT CELL (2012)
Physiological Genomics of Response to Soil Drying in Diverse Arabidopsis Accessions
David L. Des Marais et al.
PLANT CELL (2012)
Reshaping of the maize transcriptome by domestication
Ruth Swanson-Wagner et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Widespread dynamic DNA methylation in response to biotic stress
Robert H. Dowen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Transcriptome and methylome interactions in rice hybrids
Ramakrishna K. Chodavarapu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
A Gain-of-Function Polymorphism Controlling Complex Traits and Fitness in Nature
Kasavajhala V. S. K. Prasad et al.
SCIENCE (2012)
Natural Enemies Drive Geographic Variation in Plant Defenses
Tobias Zuest et al.
SCIENCE (2012)
Insect Herbivores Drive Real-Time Ecological and Evolutionary Change in Plant Populations
Anurag A. Agrawal et al.
SCIENCE (2012)
Genome-Wide Patterns of Arabidopsis Gene Expression in Nature
Christina L. Richards et al.
PLOS GENETICS (2012)
Plant sexual reproduction during climate change: gene function in natura studied by ecological and evolutionary systems biology
Kentaro K. Shimizu et al.
ANNALS OF BOTANY (2011)
Applications of next generation sequencing in molecular ecology of non-model organisms
R. Ekblom et al.
HEREDITY (2011)
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
Xiangchao Gan et al.
NATURE (2011)
A Map of Local Adaptation in Arabidopsis thaliana
A. Fournier-Level et al.
SCIENCE (2011)
Adaptation to Climate Across the Arabidopsis thaliana Genome
Angela M. Hancock et al.
SCIENCE (2011)
Evolutionary genetics of plant adaptation
Jill T. Anderson et al.
TRENDS IN GENETICS (2011)
Transcriptomic, proteomic and metabolomic analysis of maize responses to UV-B Comparison of greenhouse and field growth conditions
Paula Casati et al.
PLANT SIGNALING & BEHAVIOR (2011)
Growth habit determination by the balance of histone methylation activities in Arabidopsis
Jong-Hyun Ko et al.
EMBO JOURNAL (2010)
The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples
Andreas Futschik et al.
GENETICS (2010)
Natural allelic variation underlying a major fitness trade-off in Arabidopsis thaliana
Marco Todesco et al.
NATURE (2010)
Dissection of genetically complex traits with extremely large pools of yeast segregants
Ian M. Ehrenreich et al.
NATURE (2010)
Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
Susanna Atwell et al.
NATURE (2010)
Genome-wide association studies of 14 agronomic traits in rice landraces
Xuehui Huang et al.
NATURE GENETICS (2010)
Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP)
Kerstin Kaufmann et al.
NATURE PROTOCOLS (2010)
Transcriptome profiles of hybrid poplar (Populus trichocarpa x deltoides) reveal rapid changes in undamaged, systemic sink leaves after simulated feeding by forest tent caterpillar (Malacosoma disstria)
Ryan N. Philippe et al.
NEW PHYTOLOGIST (2010)
Robust control of the seasonal expression of the Arabidopsis FLC gene in a fluctuating environment
Shinichiro Aikawa et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Genome-wide survey of Arabidopsis natural variation in downy mildew resistance using combined association and linkage mapping
Adnane Nemri et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Linkage and Association Mapping of Arabidopsis thaliana Flowering Time in Nature
Benjamin Brachi et al.
PLOS GENETICS (2010)
A transposon-induced epigenetic change leads to sex determination in melon
Antoine Martin et al.
NATURE (2009)
Genetic Properties of the Maize Nested Association Mapping Population
Michael D. McMullen et al.
SCIENCE (2009)
The Genetic Architecture of Maize Flowering Time
Edward S. Buckler et al.
SCIENCE (2009)
Effects of Genetic Perturbation on Seasonal Life History Plasticity
Amity M. Wilczek et al.
SCIENCE (2009)
A Multiparent Advanced Generation Inter-Cross to Fine-Map Quantitative Traits in Arabidopsis thaliana
Paula X. Kover et al.
PLOS GENETICS (2009)
Connecting genes, coexpression modules, and molecular signatures to environmental stress phenotypes in plants
David J. Weston et al.
BMC SYSTEMS BIOLOGY (2008)
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
Ryan Lister et al.
CELL (2008)
Natural variation in gene expression between wild and weedy populations of Helianthus annuus
Zhao Lai et al.
GENETICS (2008)
Genetic design and statistical power of nested association mapping in maize
Jianming Yu et al.
GENETICS (2008)
Next-generation genetics in plants
Magnus Nordborg et al.
NATURE (2008)
Regulatory change in YABBY-like transcription factor led to evolution of extreme fruit size during tomato domestication
Bin Cong et al.
NATURE GENETICS (2008)
Mapping and quantifying mammalian transcriptomes by RNA-Seq
Ali Mortazavi et al.
NATURE METHODS (2008)
Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
Nathan A. Baird et al.
PLOS ONE (2008)
The transcriptional landscape of the yeast genome defined by RNA sequencing
Ugrappa Nagalakshmi et al.
SCIENCE (2008)
Ecological genomics: understanding gene and genome function in the natural environment
M. C. Ungerer et al.
HEREDITY (2008)
Which evolutionary processes influence natural genetic variation for phenotypic traits?
Thomas Mitchell-Olds et al.
NATURE REVIEWS GENETICS (2007)
The genetic architecture of shoot branching in Arabidopsis thaliana:: A comparative assessment of candidate gene associations vs. quantitative trait locus mapping
Ian M. Ehrenreich et al.
GENETICS (2007)
Global eQTL mapping reveals the complex genetic architecture of transcript-level variation in Arabidopsis
Marilyn A. L. West et al.
GENETICS (2007)
Regulatory network construction in Arabidopsis by using genome-wide gene expression quantitative trait loci
Joost J. B. Keurentjes et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
The association among gene expression responses to nine abiotic stress treatments in Arabidopsis thaliana
William R. Swindell
GENETICS (2006)
An SNP caused loss of seed shattering during rice domestication
Saeko Konishi et al.
SCIENCE (2006)
Expression profiling and local adaptation of Boechera holboellii populations for water use efficiency across a naturally occurring water stress gradient
CA Knight et al.
MOLECULAR ECOLOGY (2006)
Natural genetic variation in whole-genome expression in Arabidopsis thaliana:: the impact of physiological QTL introgression
TE Juenger et al.
MOLECULAR ECOLOGY (2006)
The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo
Richard Bonneau et al.
GENOME BIOLOGY (2006)
Epistasis for fitness-related quantitative traits in Arabidopsis thaliana grown in the field and in the greenhouse
RL Malmberg et al.
GENETICS (2005)
The origin of the naked grains of maize
H Wang et al.
NATURE (2005)
High-speed conversion of cytosine to uracil in bisulfite genomic Sequencing analysis of DNA methylation
M Shiraishi et al.
DNA RESEARCH (2004)
Evolutionary and ecological functional genomics
ME Feder et al.
NATURE REVIEWS GENETICS (2003)
The impact of genomics on the study of natural variation in Arabidopsis
JO Borevitz et al.
PLANT PHYSIOLOGY (2003)
Fitness costs of R-gene-mediated resistance in Arabidopsis thaliana
D Tian et al.
NATURE (2003)
Genetics of gene expression surveyed in maize, mouse and man
EE Schadt et al.
NATURE (2003)
Functional SNPs in the lymphotoxin-α gene that are associated with susceptibility to myocardial infarction
K Ozaki et al.
NATURE GENETICS (2002)
A QTL for flowering time in Arabidopsis reveals a novel allele of CRY2
SED El-Assal et al.
NATURE GENETICS (2001)
Mapping quantitative trait loci in plants: Uses and caveats for evolutionary biology
R Mauricio
NATURE REVIEWS GENETICS (2001)