相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。The genome of Rhizophagus clarus HR1 reveals a common genetic basis for auxotrophy among arbuscular mycorrhizal fungi
Yuuki Kobayashi et al.
BMC GENOMICS (2018)
Conserved Proteins of the RNA Interference System in the Arbuscular Mycorrhizal Fungus Rhizoglomus irregulare Provide New Insight into the Evolutionary History of Glomeromycota
Soon-Jae Lee et al.
GENOME BIOLOGY AND EVOLUTION (2018)
Impact of spatial organization on a novel auxotrophic interaction among soil microbes
Xue Jiang et al.
ISME JOURNAL (2018)
Mycoplasma-related endobacteria within Mortierellomycotina fungi: diversity, distribution and functional insights into their lifestyle
Alessandro Desiro et al.
ISME JOURNAL (2018)
Arbuscular mycorrhizal fungi: intraspecific diversity and pangenomes
Stephanie Mathieu et al.
NEW PHYTOLOGIST (2018)
High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis
Eric C. H. Chen et al.
NEW PHYTOLOGIST (2018)
Host- and stage-dependent secretome of the arbuscular mycorrhizal fungus Rhizophagus irregularis
Tian Zeng et al.
PLANT JOURNAL (2018)
Ultra-low input transcriptomics reveal the spore functional content and phylogenetic affiliations of poorly studied arbuscular mycorrhizal fungi
Denis Beaudet et al.
DNA RESEARCH (2018)
'Candidatus Moeniiplasma glomeromycotorum', an endobacterium of arbuscular mycorrhizal fungi
Mizue Naito et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2017)
Who lives in a fungus? The diversity, origins and functions of fungal endobacteria living in Mucoromycota
Paola Bonfante et al.
ISME JOURNAL (2017)
Widespread adenine N6-methylation of active genes in fungi
Stephen J. Mondo et al.
NATURE GENETICS (2017)
Arbuscular mycorrhiza-specific enzymes FatM and RAM2 fine-tune lipid biosynthesis to promote development of arbuscular mycorrhiza
Armando Bravo et al.
NEW PHYTOLOGIST (2017)
Plant Signaling and Metabolic Pathways Enabling Arbuscular Mycorrhizal Symbiosis
Allyson M. MacLean et al.
PLANT CELL (2017)
Plants transfer lipids to sustain colonization by mutualistic mycorrhizal and parasitic fungi
Yina Jiang et al.
SCIENCE (2017)
DASH-type cryptochromes regulate fruiting body development and secondary metabolism differently than CmWC-1 in the fungus Cordyceps militaris
Fen Wang et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2017)
A Transcriptional Program for Arbuscule Degeneration during AM Symbiosis Is Regulated by MYB1
Daniela S. Floss et al.
CURRENT BIOLOGY (2017)
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
Jaime Huerta-Cepas et al.
NUCLEIC ACIDS RESEARCH (2016)
Genome-wide analyses of chitin synthases identify horizontal gene transfers towards bacteria and allow a robust and unifying classification into fungi
Isabelle R. Goncalves et al.
BMC EVOLUTIONARY BIOLOGY (2016)
Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication
Luis M. Corrochano et al.
CURRENT BIOLOGY (2016)
Uniting species-and community-oriented approaches to understand arbuscular mycorrhizal fungal diversity
Maarja Opik et al.
FUNGAL ECOLOGY (2016)
Defying Muller's Ratchet: Ancient Heritable Endobacteria Escape Extinction through Retention of Recombination and Genome Plasticity
Mizue Naito et al.
MBIO (2016)
The Epigenomic Landscape of Prokaryotes
Matthew J. Blow et al.
PLOS GENETICS (2016)
Evidence for the sexual origin of heterokaryosis in arbuscular mycorrhizal fungi
Jeanne Ropars et al.
NATURE MICROBIOLOGY (2016)
Fungal Effectors and Plant Susceptibility
Libera Lo Presti et al.
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 66 (2015)
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
Felipe A. Simao et al.
BIOINFORMATICS (2015)
Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
Annegret Kohler et al.
NATURE GENETICS (2015)
Mosaic genome of endobacteria in arbuscular mycorrhizal fungi: Transkingdom gene transfer in an ancient mycoplasma-fungus association
Gloria Torres-Cortes et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Minimal genomes of mycoplasma-related endobacteria are plastic and contain host-derived genes for sustained life within Glomeromycota
Mizue Naito et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Global assessment of arbuscular mycorrhizal fungus diversity reveals very low endemism
J. Davison et al.
SCIENCE (2015)
Beyond the Whole-Genome Duplication: Phylogenetic Evidence for an Ancient Interspecies Hybridization in the Baker's Yeast Lineage
Marina Marcet-Houben et al.
PLOS BIOLOGY (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries
Richard M. Leggett et al.
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola
Braham Dhillon et al.
BMC GENOMICS (2014)
Binning metagenomic contigs by coverage and composition
Johannes Alneberg et al.
NATURE METHODS (2014)
Fatty acid synthesis and lipid metabolism in the obligate biotrophic fungus Rhizophagus irregularis during mycorrhization of Lotus japonicus
Vera Wewer et al.
PLANT JOURNAL (2014)
Single Nucleus Genome Sequencing Reveals High Similarity among Nuclei of an Endomycorrhizal Fungus
Kui Lin et al.
PLOS GENETICS (2014)
Shared Signatures of Parasitism and Phylogenomics Unite Cryptomycota and Microsporidia
Timothy Y. James et al.
CURRENT BIOLOGY (2013)
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Brian J. Haas et al.
NATURE PROTOCOLS (2013)
Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis
Emilie Tisserant et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
The genome of the obligate endobacterium of an AM fungus reveals an interphylum network of nutritional interactions
Stefano Ghignone et al.
ISME JOURNAL (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Ruibang Luo et al.
GIGASCIENCE (2012)
RNA Interference in Fungi: Pathways, Functions, and Applications
Yunkun Dang et al.
EUKARYOTIC CELL (2011)
Conserved Meiotic Machinery in Glomus spp., a Putatively Ancient Asexual Fungal Lineage
Sébastien Halary et al.
Genome Biology and Evolution (2011)
Fungal lipochitooligosaccharide symbiotic signals in arbuscular mycorrhiza
Fabienne Maillet et al.
NATURE (2011)
SignalP 4.0: discriminating signal peptides from transmembrane regions
Thomas Nordahl Petersen et al.
NATURE METHODS (2011)
Revealing Natural Relationships among Arbuscular Mycorrhizal Fungi: Culture Line BEG47 Represents Diversispora epigaea, Not Glomus versiforme
Arthur Schuessler et al.
PLOS ONE (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
A glimpse into the basis of vision in the kingdom Mycota
Alexander Idnurm et al.
FUNGAL GENETICS AND BIOLOGY (2010)
Photobiology in the Zygomycota: Multiple photoreceptor genes for complex responses to light
Luis M. Corrochano et al.
FUNGAL GENETICS AND BIOLOGY (2010)
The obligate endobacteria of arbuscular mycorrhizal fungi are ancient heritable components related to the Mollicutes
Maria Naumann et al.
ISME JOURNAL (2010)
Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
Assaf Zemach et al.
SCIENCE (2010)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
A CRY-DASH-type photolyase/cryptochrome from Sclerotinia sclerotiorum mediates minor UV-A-specific effects on development
Selvakumar Veluchamy et al.
FUNGAL GENETICS AND BIOLOGY (2008)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons
Zhao Xu et al.
NUCLEIC ACIDS RESEARCH (2007)
Presymbiotic growth and sporal morphology are affected in the arbuscular mycorrhizal fungus Gigaspora margarita cured of its endobacteria
Erica Lumini et al.
CELLULAR MICROBIOLOGY (2007)
PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
Mikita Suyama et al.
NUCLEIC ACIDS RESEARCH (2006)
CAFE: a computational tool for the study of gene family evolution
T De Bie et al.
BIOINFORMATICS (2006)
Novel G-protein-coupled receptor-like proteins in the plant pathogenic fungus Magnaporthe grisea
RD Kulkarni et al.
GENOME BIOLOGY (2005)
The PANTHER database of protein families, subfamilies, functions and pathways
HY Mi et al.
NUCLEIC ACIDS RESEARCH (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
The lgtABCDE gene cluster, involved in lipooligosaccharide biosynthesis in Neisseria gonorrhoeae, contains multiple promoter sequences
DC Braun et al.
JOURNAL OF BACTERIOLOGY (2004)
Versatile and open software for comparing large genomes
S Kurtz et al.
GENOME BIOLOGY (2004)
r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
MJ Sanderson
BIOINFORMATICS (2003)
An efficient algorithm for large-scale detection of protein families
AJ Enright et al.
NUCLEIC ACIDS RESEARCH (2002)