相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes
Joel A. Boyd et al.
NUCLEIC ACIDS RESEARCH (2018)
Evolutionary history of carbon monoxide dehydrogenase/acetyl-CoA synthase, one of the oldest enzymatic complexes
Panagiotis S. Adam et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)
Methanogens: biochemical background and biotechnological applications
Franziska Enzmann et al.
AMB EXPRESS (2018)
Horizontal gene transfer constrains the timing of methanogen evolution
Joanna M. Wolfe et al.
NATURE ECOLOGY & EVOLUTION (2018)
Gene transfers can date the tree of life
Adrian A. Davin et al.
NATURE ECOLOGY & EVOLUTION (2018)
Extreme Deviations from Expected Evolutionary Rates in Archaeal Protein Families
Celine Petitjean et al.
Genome Biology and Evolution (2017)
The growing tree of Archaea: new perspectives on their diversity, evolution and ecology
Panagiotis S. Adam et al.
ISME JOURNAL (2017)
Phylogenetic and Structural Comparisons of the Three Types of Methyl Coenzyme M Reductase from Methanococcales and Methanobacteriales
Tristan Wagner et al.
JOURNAL OF BACTERIOLOGY (2017)
Energy Metabolism during Anaerobic Methane Oxidation in ANME Archaea
Shawn E. McGlynn
MICROBES AND ENVIRONMENTS (2017)
Elucidation of the biosynthesis of the methane catalyst coenzyme F430
Simon J. Moore et al.
NATURE (2017)
Integrative modeling of gene and genome evolution roots the archaeal tree of life
Tom A. Williams et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
The deep, hot biosphere: Twenty-five years of retrospection
Daniel R. Colman et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Cas9-mediated genome editing in the methanogenic archaeon Methanosarcina acetivorans
Dipti D. Nayak et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
MICROBIAL GENOMICS Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life
Anja Spang et al.
SCIENCE (2017)
Reverse Methanogenesis and Respiration in Methanotrophic Archaea
Peer H. A. Timmers et al.
ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL (2017)
Genomic insights into potential interdependencies in microbial hydrocarbon and nutrient cycling in hydrothermal sediments
Nina Dombrowski et al.
MICROBIOME (2017)
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
Donovan H. Parks et al.
NATURE MICROBIOLOGY (2017)
Discovery of extremely halophilic, methyl-reducing euryarchaea provides insights into the evolutionary origin of methanogenesis
Dimitry Y. Sorokin et al.
NATURE MICROBIOLOGY (2017)
Occurrence and expression of novel methyl-coenzyme M reductase gene (mcrA) variants in hot spring sediments
Luke J. McKay et al.
SCIENTIFIC REPORTS (2017)
Evidence for the involvement of two heterodisulfide reductases in the energy-conserving system of Methanomassiliicoccus luminyensis
Lena Kroeninger et al.
FEBS JOURNAL (2016)
Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated
Mathieu Groussin et al.
MOLECULAR BIOLOGY AND EVOLUTION (2016)
Genomic evidence for distinct carbon substrate preferences and ecological niches of Bathyarchaeota in estuarine sediments
Cassandre Sara Lazar et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
Methanogenesis and the Wood-Ljungdahl Pathway: An Ancient, Versatile, and Fragile Association
Guillaume Borrel et al.
GENOME BIOLOGY AND EVOLUTION (2016)
Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction
Kiley W. Seitz et al.
ISME JOURNAL (2016)
Differences down-under: alcohol-fueled methanogenesis by archaea present in Australian macropodids
Emily C. Hoedt et al.
ISME JOURNAL (2016)
Chasing the elusive Euryarchaeota class WSA2: genomes reveal a uniquely fastidious methylreducing methanogen
Masaru Konishi Nobu et al.
ISME JOURNAL (2016)
Thermophilic archaea activate butane via alkyl-coenzyme M formation
Rafael Laso-Perez et al.
NATURE (2016)
Archaea catalyze iron-dependent anaerobic oxidation of methane
Katharina F. Ettwig et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
The biosynthetic pathway of coenzyme F430 in methanogenic and methanotrophic archaea
Kaiyuan Zheng et al.
SCIENCE (2016)
Methane production from coal by a single methanogen
Daisuke Mayumi et al.
SCIENCE (2016)
The radical mechanism of biological methane synthesis by methyl-coenzyme M reductase
Thanyaporn Wongnate et al.
SCIENCE (2016)
Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea
Brett J. Baker et al.
NATURE MICROBIOLOGY (2016)
Genomic and enzymatic evidence for acetogenesis among multiple lineages of the archaeal phylum Bathyarchaeota widespread in marine sediments
Y. He et al.
NATURE MICROBIOLOGY (2016)
Lokiarchaeon is hydrogen dependent
Filipa L. Sousa et al.
NATURE MICROBIOLOGY (2016)
Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota
Inka Vanwonterghem et al.
NATURE MICROBIOLOGY (2016)
Metabolic traits of an uncultured archaeal lineage-MSBL1-from brine pools of the Red Sea
Romano Mwirichia et al.
SCIENTIFIC REPORTS (2016)
Environmental controls on intragroup diversity of the uncultured benthic archaea of the miscellaneous Crenarchaeotal group lineage naturally enriched in anoxic sediments of the White Oak River estuary (North Carolina, USA)
Cassandre Sara Lazar et al.
ENVIRONMENTAL MICROBIOLOGY (2015)
Methanogenic archaea database containing physiological and biochemical characteristics
Slawomir Jablonski et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2015)
The Reaction Mechanism of Methyl-Coenzyme M Reductase HOW AN ENZYME ENFORCES STRICT BINDING ORDER
Thanyaporn Wongnate et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2015)
Intercellular wiring enables electron transfer between methanotrophic archaea and bacteria
Gunter Wegener et al.
NATURE (2015)
Single cell activity reveals direct electron transfer in methanotrophic consortia
Shawn E. McGlynn et al.
NATURE (2015)
The two-domain tree of life is linked to a new root for the Archaea
Kasie Raymann et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics
Paul N. Evans et al.
SCIENCE (2015)
A Metagenomics-Based Metabolic Model of Nitrate-Dependent Anaerobic Oxidation of Methane by Methanoperedens-Like Archaea
Arslan Arshad et al.
FRONTIERS IN MICROBIOLOGY (2015)
Marine microbes rapidly adapt to consume ethane, propane, and butane within the dissolved hydrocarbon plume of a natural seep
Stephanie D. Mendes et al.
JOURNAL OF GEOPHYSICAL RESEARCH-OCEANS (2015)
New Mode of Energy Metabolism in the Seventh Order of Methanogens as Revealed by Comparative Genome Analysis of Candidatus Methanoplasma termitum
Kristina Lang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)
Rooting the Domain Archaea by Phylogenomic Analysis Supports the Foundation of the New Kingdom Proteoarchaeota
Celine Petitjean et al.
GENOME BIOLOGY AND EVOLUTION (2015)
Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi) sulfite reductases
Albert Leopold Mueller et al.
ISME Journal (2015)
ATP synthases from archaea: The beauty of a molecular motor
Gerhard Grueber et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2014)
Bioenergetics and anaerobic respiratory chains of aceticlastic methanogens
Cornelia Welte et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2014)
Methanotrophic archaea possessing diverging methane-oxidizing and electron-transporting pathways
Feng-Ping Wang et al.
ISME JOURNAL (2014)
Discovery of a novel methanogen prevalent in thawing permafrost
Rhiannon Mondav et al.
NATURE COMMUNICATIONS (2014)
Unique Characteristics of the Pyrrolysine System in the 7th Order of Methanogens: Implications for the Evolution of a Genetic Code Expansion Cassette
Guillaume Borrel et al.
ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL (2014)
Phylogenetically Driven Sequencing of Extremely Halophilic Archaea Reveals Strategies for Static and Dynamic Osmo-response
Erin A. Becker et al.
PLOS GENETICS (2014)
Novel Cultivation-Based Approach To Understanding the Miscellaneous Crenarchaeotic Group (MCG) Archaea from Sedimentary Ecosystems
Emma J. Gagen et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Evolution of Na+ and H+ bioenergetics in methanogenic archaea
Katharina Schlegel et al.
BIOCHEMICAL SOCIETY TRANSACTIONS (2013)
Phylogenomic Data Support a Seventh Order of Methylotrophic Methanogens and Provide Insights into the Evolution of Methanogenesis
Guillaume Borrel et al.
GENOME BIOLOGY AND EVOLUTION (2013)
Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage
Mohamed F. Haroon et al.
NATURE (2013)
Three decades of global methane sources and sinks
Stefanie Kirschke et al.
NATURE GEOSCIENCE (2013)
Isolation and Characterization of a Thermophilic, Obligately Anaerobic and Heterotrophic Marine Chloroflexi Bacterium from a Chloroflexi-dominated Microbial Community Associated with a Japanese Shallow Hydrothermal System, and Proposal for Thermomarinilinea lacunofontalis gen. nov., sp nov.
Takuro Nunoura et al.
MICROBES AND ENVIRONMENTS (2013)
Early bioenergetic evolution
Filipa L. Sousa et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)
Genomic Insights into Syntrophy: The Paradigm for Anaerobic Metabolic Cooperation
Jessica R. Sieber et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 66 (2012)
Microbial community characteristics of petroleum reservoir production water amended with n-alkanes and incubated under nitrate-, sulfate-reducing and methanogenic conditions
Wei Li et al.
INTERNATIONAL BIODETERIORATION & BIODEGRADATION (2012)
Methanobacterium lacus sp nov., isolated from the profundal sediment of a freshwater meromictic lake
Guillaume Borrel et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2012)
Methanomassiliicoccus luminyensis gen. nov., sp nov., a methanogenic archaeon isolated from human faeces
Bedis Dridi et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2012)
Anaerobic oxidation of methane at different temperature regimes in Guaymas Basin hydrothermal sediments
Jennifer F. Biddle et al.
ISME JOURNAL (2012)
Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments
Kyoko Kubo et al.
ISME JOURNAL (2012)
Zero-valent sulphur is a key intermediate in marine methane oxidation
Jana Milucka et al.
NATURE (2012)
Promiscuous archaeal ATP synthase concurrently coupled to Na+ and H+ translocation
Katharina Schlegel et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Essential anaplerotic role for the energy-converting hydrogenase Eha in hydrogenotrophic methanogenesis
Thomas J. Lie et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea
Shijulal Nelson-Sathi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Methanogens: a window into ancient sulfur metabolism
Yuchen Liu et al.
TRENDS IN MICROBIOLOGY (2012)
Ecological Aspects of the Distribution of Different Autotrophic CO2 Fixation Pathways
Ivan A. Berg
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
The Impact of Aridification and Vegetation Type on Changes in the Community Structure of Methane-Cycling Microorganisms in Japanese Wetland Soils
Takashi Narihiro et al.
BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY (2011)
Fundamentals of methanogenic pathways that are key to the biomethanation of complex biomass
James G. Ferry
CURRENT OPINION IN BIOTECHNOLOGY (2011)
Anaerobic oxidation of methane with sulfate: on the reversibility of the reactions that are catalyzed by enzymes also involved in methanogenesis from CO2
Rudolf K. Thauer
CURRENT OPINION IN MICROBIOLOGY (2011)
Membrane-Bound Electron Transport in Methanosaeta thermophila
Cornelia Welte et al.
JOURNAL OF BACTERIOLOGY (2011)
Carbon and sulfur back flux during anaerobic microbial oxidation of methane and coupled sulfate reduction
Thomas Holler et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Coupling of ferredoxin and heterodisulfide reduction via electron bifurcation in hydrogenotrophic methanogenic archaea
Anne-Kristin Kaster et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Archaeal phylogenomics provides evidence in support of a methanogenic origin of the Archaea and a thaumarchaeal origin for the eukaryotes
S. Kelly et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2011)
Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group
Anke Meyerdierks et al.
ENVIRONMENTAL MICROBIOLOGY (2010)
Anaerobic Oxidation of Methane: Progress with an Unknown Process
Katrin Knittel et al.
ANNUAL REVIEW OF MICROBIOLOGY (2009)
Prokaryotic Populations and Activities in an Interbedded Coal Deposit, Including a Previously Deeply Buried Section (1.6-2.3 km) Above 150 Ma Basement Rock
John C. Fry et al.
GEOMICROBIOLOGY JOURNAL (2009)
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
Morgan N. Price et al.
MOLECULAR BIOLOGY AND EVOLUTION (2009)
The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods
Peter G. Foster et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2009)
Manganese- and Iron-Dependent Marine Methane Oxidation
Emily J. Beal et al.
SCIENCE (2009)
Metabolic, phylogenetic, and ecological diversity of the methanogenic archaea
Yuchen Liu et al.
INCREDIBLE ANAEROBES: FROM PHYSIOLOGY TO GENOMICS TO FUELS (2008)
Enzymology of the Wood-Ljungdahl pathway of acetogenesis
Stephen W. Ragsdale
INCREDIBLE ANAEROBES: FROM PHYSIOLOGY TO GENOMICS TO FUELS (2008)
Phylogenetic Comparison of the Methanogenic Communities from an Acidic, Oligotrophic Fen and an Anaerobic Digester Treating Municipal Wastewater Sludge
Lisa M. Steinberg et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Mutagenesis of the C1 oxidation pathway in Methanosarcina barkeri:: New insights into the Mtr/Mer bypass pathway
Paula V. Welander et al.
JOURNAL OF BACTERIOLOGY (2008)
Methanogenic archaea: ecologically relevant differences in energy conservation
Rudolf K. Thauer et al.
NATURE REVIEWS MICROBIOLOGY (2008)
Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea
Kira S. Makarova et al.
BIOLOGY DIRECT (2007)
On the origin of biochemistry at an alkaline hydrothermal vent
William Martin et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2007)
Isolation of key methanogens for global methane emission from rice paddy fields: a novel isolate affiliated with the clone cluster rice cluster I
Sanae Sakai et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Diversity and abundance of aerobic and anaerobic methane oxidizers at the Haakon Mosby mud volcano, Barents Sea
Tina Loesekann et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Oceanic methane biogeochemistry
William S. Reeburgh
CHEMICAL REVIEWS (2007)
Isolation of a novel acidiphilic methanogen from an acidic peat bog
Suzanna L. Braeuer et al.
NATURE (2006)
The origin and evolution of Archaea: a state of the art
Simonetta Gribaldo et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2006)
The stepwise evolution of early life driven by energy conservation
James G. Ferry et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Methanosaeta harundinacea sp nov., a novel acetate-scavenging methanogen isolated from a UASB reactor
K Ma et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2006)
The genome sequence of Methanosphaera stadtmanae reveals why this human intestinal archaeon is restricted to methanol and H-2 for methane formation and ATP synthesis
WF Fricke et al.
JOURNAL OF BACTERIOLOGY (2006)
Loss of the mtr operon in Methanosarcina blocks growth on methanol, but not methanogenesis, and reveals an unknown methanogenic pathway
PV Welander et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Subfunctionalization of duplicated genes as a transition state to neofunctionalization
S Rastogi et al.
BMC EVOLUTIONARY BIOLOGY (2005)
Phenotypic characterization of Rice Cluster III archaea without prior isolation by applying quantitative polymerase chain reaction to an enrichment culture
D Kemnitz et al.
ENVIRONMENTAL MICROBIOLOGY (2005)
Reverse methanogenesis: Testing the hypothesis with environmental genomics
SJ Hallam et al.
SCIENCE (2004)
Characterization of C1-metabolizing prokaryotic communities in methane seep habitats at the Kuroshima Knoll, southern Ryukyu arc, by analyzing pmoA, mmoX, mxaF, mcrA, and 16S rRNA genes
F Inagaki et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)
Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea
SJ Hallam et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)
Growth and methane oxidation rates of anaerobic methanotrophic archaea in a continuous-flow bioreactor
PR Girguis et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)
The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill
PE Luton et al.
MICROBIOLOGY-SGM (2002)
Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments
VJ Orphan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Anaerobic microbial metabolism can proceed close to thermodynamic limits
BE Jackson et al.
NATURE (2002)
The Na+-translocating methyltransferase complex from methanogenic archaea
G Gottschalk et al.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2001)
Methanomicrococcus blatticola gen. nov., sp nov., a methanol- and methylamine-reducing methanogen from the hindgut of the cockroach Periplaneta americana
WW Sprenger et al.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2000)
A marine microbial consortium apparently mediating anaerobic oxidation of methane
A Boetius et al.
NATURE (2000)
Taxonomic phylogenetic and ecological diversity of methanogenic Archaea
JL Garcia et al.
ANAEROBE (2000)