4.7 Review

An evolving view of methane metabolism in the Archaea

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes

Joel A. Boyd et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Multidisciplinary Sciences

Evolutionary history of carbon monoxide dehydrogenase/acetyl-CoA synthase, one of the oldest enzymatic complexes

Panagiotis S. Adam et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2018)

Review Biotechnology & Applied Microbiology

Methanogens: biochemical background and biotechnological applications

Franziska Enzmann et al.

AMB EXPRESS (2018)

Article Ecology

Horizontal gene transfer constrains the timing of methanogen evolution

Joanna M. Wolfe et al.

NATURE ECOLOGY & EVOLUTION (2018)

Article Ecology

Gene transfers can date the tree of life

Adrian A. Davin et al.

NATURE ECOLOGY & EVOLUTION (2018)

Article Genetics & Heredity

Extreme Deviations from Expected Evolutionary Rates in Archaeal Protein Families

Celine Petitjean et al.

Genome Biology and Evolution (2017)

Review Biotechnology & Applied Microbiology

Energy Metabolism during Anaerobic Methane Oxidation in ANME Archaea

Shawn E. McGlynn

MICROBES AND ENVIRONMENTS (2017)

Article Multidisciplinary Sciences

Elucidation of the biosynthesis of the methane catalyst coenzyme F430

Simon J. Moore et al.

NATURE (2017)

Article Multidisciplinary Sciences

Integrative modeling of gene and genome evolution roots the archaeal tree of life

Tom A. Williams et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Multidisciplinary Sciences

The deep, hot biosphere: Twenty-five years of retrospection

Daniel R. Colman et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Multidisciplinary Sciences

Cas9-mediated genome editing in the methanogenic archaeon Methanosarcina acetivorans

Dipti D. Nayak et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)

Article Microbiology

Reverse Methanogenesis and Respiration in Methanotrophic Archaea

Peer H. A. Timmers et al.

ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL (2017)

Article Biochemistry & Molecular Biology

Gene Acquisitions from Bacteria at the Origins of Major Archaeal Clades Are Vastly Overestimated

Mathieu Groussin et al.

MOLECULAR BIOLOGY AND EVOLUTION (2016)

Article Evolutionary Biology

Methanogenesis and the Wood-Ljungdahl Pathway: An Ancient, Versatile, and Fragile Association

Guillaume Borrel et al.

GENOME BIOLOGY AND EVOLUTION (2016)

Article Multidisciplinary Sciences

Thermophilic archaea activate butane via alkyl-coenzyme M formation

Rafael Laso-Perez et al.

NATURE (2016)

Article Multidisciplinary Sciences

Archaea catalyze iron-dependent anaerobic oxidation of methane

Katharina F. Ettwig et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)

Article Multidisciplinary Sciences

The biosynthetic pathway of coenzyme F430 in methanogenic and methanotrophic archaea

Kaiyuan Zheng et al.

SCIENCE (2016)

Article Multidisciplinary Sciences

Methane production from coal by a single methanogen

Daisuke Mayumi et al.

SCIENCE (2016)

Article Multidisciplinary Sciences

The radical mechanism of biological methane synthesis by methyl-coenzyme M reductase

Thanyaporn Wongnate et al.

SCIENCE (2016)

Article Microbiology

Genomic inference of the metabolism of cosmopolitan subsurface Archaea, Hadesarchaea

Brett J. Baker et al.

NATURE MICROBIOLOGY (2016)

Article Microbiology

Lokiarchaeon is hydrogen dependent

Filipa L. Sousa et al.

NATURE MICROBIOLOGY (2016)

Article Microbiology

Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota

Inka Vanwonterghem et al.

NATURE MICROBIOLOGY (2016)

Article Multidisciplinary Sciences

Metabolic traits of an uncultured archaeal lineage-MSBL1-from brine pools of the Red Sea

Romano Mwirichia et al.

SCIENTIFIC REPORTS (2016)

Article Microbiology

Methanogenic archaea database containing physiological and biochemical characteristics

Slawomir Jablonski et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2015)

Article Biochemistry & Molecular Biology

The Reaction Mechanism of Methyl-Coenzyme M Reductase HOW AN ENZYME ENFORCES STRICT BINDING ORDER

Thanyaporn Wongnate et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2015)

Article Multidisciplinary Sciences

Single cell activity reveals direct electron transfer in methanotrophic consortia

Shawn E. McGlynn et al.

NATURE (2015)

Article Multidisciplinary Sciences

The two-domain tree of life is linked to a new root for the Archaea

Kasie Raymann et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Biotechnology & Applied Microbiology

New Mode of Energy Metabolism in the Seventh Order of Methanogens as Revealed by Comparative Genome Analysis of Candidatus Methanoplasma termitum

Kristina Lang et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2015)

Article Evolutionary Biology

Rooting the Domain Archaea by Phylogenomic Analysis Supports the Foundation of the New Kingdom Proteoarchaeota

Celine Petitjean et al.

GENOME BIOLOGY AND EVOLUTION (2015)

Review Biochemistry & Molecular Biology

ATP synthases from archaea: The beauty of a molecular motor

Gerhard Grueber et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2014)

Review Biochemistry & Molecular Biology

Bioenergetics and anaerobic respiratory chains of aceticlastic methanogens

Cornelia Welte et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2014)

Article Multidisciplinary Sciences

Discovery of a novel methanogen prevalent in thawing permafrost

Rhiannon Mondav et al.

NATURE COMMUNICATIONS (2014)

Article Biotechnology & Applied Microbiology

Novel Cultivation-Based Approach To Understanding the Miscellaneous Crenarchaeotic Group (MCG) Archaea from Sedimentary Ecosystems

Emma J. Gagen et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)

Article Biochemistry & Molecular Biology

Evolution of Na+ and H+ bioenergetics in methanogenic archaea

Katharina Schlegel et al.

BIOCHEMICAL SOCIETY TRANSACTIONS (2013)

Article Multidisciplinary Sciences

Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage

Mohamed F. Haroon et al.

NATURE (2013)

Review Geosciences, Multidisciplinary

Three decades of global methane sources and sinks

Stefanie Kirschke et al.

NATURE GEOSCIENCE (2013)

Review Biology

Early bioenergetic evolution

Filipa L. Sousa et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)

Review Microbiology

Genomic Insights into Syntrophy: The Paradigm for Anaerobic Metabolic Cooperation

Jessica R. Sieber et al.

ANNUAL REVIEW OF MICROBIOLOGY, VOL 66 (2012)

Article Microbiology

Methanobacterium lacus sp nov., isolated from the profundal sediment of a freshwater meromictic lake

Guillaume Borrel et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2012)

Article Microbiology

Methanomassiliicoccus luminyensis gen. nov., sp nov., a methanogenic archaeon isolated from human faeces

Bedis Dridi et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2012)

Article Multidisciplinary Sciences

Zero-valent sulphur is a key intermediate in marine methane oxidation

Jana Milucka et al.

NATURE (2012)

Article Multidisciplinary Sciences

Promiscuous archaeal ATP synthase concurrently coupled to Na+ and H+ translocation

Katharina Schlegel et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Essential anaplerotic role for the energy-converting hydrogenase Eha in hydrogenotrophic methanogenesis

Thomas J. Lie et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Acquisition of 1,000 eubacterial genes physiologically transformed a methanogen at the origin of Haloarchaea

Shijulal Nelson-Sathi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Review Biochemistry & Molecular Biology

Methanogens: a window into ancient sulfur metabolism

Yuchen Liu et al.

TRENDS IN MICROBIOLOGY (2012)

Review Biotechnology & Applied Microbiology

Ecological Aspects of the Distribution of Different Autotrophic CO2 Fixation Pathways

Ivan A. Berg

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

Article Biochemistry & Molecular Biology

The Impact of Aridification and Vegetation Type on Changes in the Community Structure of Methane-Cycling Microorganisms in Japanese Wetland Soils

Takashi Narihiro et al.

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY (2011)

Review Biochemical Research Methods

Fundamentals of methanogenic pathways that are key to the biomethanation of complex biomass

James G. Ferry

CURRENT OPINION IN BIOTECHNOLOGY (2011)

Article Microbiology

Membrane-Bound Electron Transport in Methanosaeta thermophila

Cornelia Welte et al.

JOURNAL OF BACTERIOLOGY (2011)

Article Multidisciplinary Sciences

Carbon and sulfur back flux during anaerobic microbial oxidation of methane and coupled sulfate reduction

Thomas Holler et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Coupling of ferredoxin and heterodisulfide reduction via electron bifurcation in hydrogenotrophic methanogenic archaea

Anne-Kristin Kaster et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Microbiology

Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group

Anke Meyerdierks et al.

ENVIRONMENTAL MICROBIOLOGY (2010)

Review Microbiology

Anaerobic Oxidation of Methane: Progress with an Unknown Process

Katrin Knittel et al.

ANNUAL REVIEW OF MICROBIOLOGY (2009)

Article Biochemistry & Molecular Biology

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

Morgan N. Price et al.

MOLECULAR BIOLOGY AND EVOLUTION (2009)

Article Biology

The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods

Peter G. Foster et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2009)

Article Multidisciplinary Sciences

Manganese- and Iron-Dependent Marine Methane Oxidation

Emily J. Beal et al.

SCIENCE (2009)

Article Microbiology

Metabolic, phylogenetic, and ecological diversity of the methanogenic archaea

Yuchen Liu et al.

INCREDIBLE ANAEROBES: FROM PHYSIOLOGY TO GENOMICS TO FUELS (2008)

Article Microbiology

Enzymology of the Wood-Ljungdahl pathway of acetogenesis

Stephen W. Ragsdale

INCREDIBLE ANAEROBES: FROM PHYSIOLOGY TO GENOMICS TO FUELS (2008)

Article Biotechnology & Applied Microbiology

Phylogenetic Comparison of the Methanogenic Communities from an Acidic, Oligotrophic Fen and an Anaerobic Digester Treating Municipal Wastewater Sludge

Lisa M. Steinberg et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)

Review Microbiology

Methanogenic archaea: ecologically relevant differences in energy conservation

Rudolf K. Thauer et al.

NATURE REVIEWS MICROBIOLOGY (2008)

Review Biology

On the origin of biochemistry at an alkaline hydrothermal vent

William Martin et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2007)

Article Biotechnology & Applied Microbiology

Isolation of key methanogens for global methane emission from rice paddy fields: a novel isolate affiliated with the clone cluster rice cluster I

Sanae Sakai et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Diversity and abundance of aerobic and anaerobic methane oxidizers at the Haakon Mosby mud volcano, Barents Sea

Tina Loesekann et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Review Chemistry, Multidisciplinary

Oceanic methane biogeochemistry

William S. Reeburgh

CHEMICAL REVIEWS (2007)

Article Multidisciplinary Sciences

Isolation of a novel acidiphilic methanogen from an acidic peat bog

Suzanna L. Braeuer et al.

NATURE (2006)

Article Biology

The origin and evolution of Archaea: a state of the art

Simonetta Gribaldo et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2006)

Article Biochemistry & Molecular Biology

The stepwise evolution of early life driven by energy conservation

James G. Ferry et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Article Microbiology

Methanosaeta harundinacea sp nov., a novel acetate-scavenging methanogen isolated from a UASB reactor

K Ma et al.

INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2006)

Article Multidisciplinary Sciences

Loss of the mtr operon in Methanosarcina blocks growth on methanol, but not methanogenesis, and reveals an unknown methanogenic pathway

PV Welander et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Evolutionary Biology

Subfunctionalization of duplicated genes as a transition state to neofunctionalization

S Rastogi et al.

BMC EVOLUTIONARY BIOLOGY (2005)

Article Multidisciplinary Sciences

Reverse methanogenesis: Testing the hypothesis with environmental genomics

SJ Hallam et al.

SCIENCE (2004)

Article Biotechnology & Applied Microbiology

Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea

SJ Hallam et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)

Article Biotechnology & Applied Microbiology

Growth and methane oxidation rates of anaerobic methanotrophic archaea in a continuous-flow bioreactor

PR Girguis et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)

Article Multidisciplinary Sciences

Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments

VJ Orphan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Multidisciplinary Sciences

Anaerobic microbial metabolism can proceed close to thermodynamic limits

BE Jackson et al.

NATURE (2002)

Review Biochemistry & Molecular Biology

The Na+-translocating methyltransferase complex from methanogenic archaea

G Gottschalk et al.

BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS (2001)