4.8 Review

Cellular barcoding: lineage tracing, screening and beyond

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Efficient in situ barcode sequencing using padlock probe-based BaristaSeq

Xiaoyin Chen et al.

NUCLEIC ACIDS RESEARCH (2018)

Article Neurosciences

Neural lineage tracing in the mammalian brain

Jian Ma et al.

CURRENT OPINION IN NEUROBIOLOGY (2018)

Article Multidisciplinary Sciences

Whole-organism clone tracing using single-cell sequencing

Anna Alemany et al.

NATURE (2018)

Article Multidisciplinary Sciences

Clonal analysis of lineage fate in native haematopoiesis

Alejo E. Rodriguez-Fraticelli et al.

NATURE (2018)

Article Biotechnology & Applied Microbiology

Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

Bushra Raj et al.

NATURE BIOTECHNOLOGY (2018)

Article Biotechnology & Applied Microbiology

Simultaneous lineage tracing and cell-type identification using CRISPR-Cas9-induced genetic scars

Bastiaan Spanjaard et al.

NATURE BIOTECHNOLOGY (2018)

Article Biochemical Research Methods

On the design of CRISPR-based single-cell molecular screens

Andrew J. Hill et al.

NATURE METHODS (2018)

Article Multidisciplinary Sciences

Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo

Daniel E. Wagner et al.

SCIENCE (2018)

Article Multidisciplinary Sciences

The logic of single-cell projections from visual cortex

Yunyun Han et al.

NATURE (2018)

Article Biochemical Research Methods

Rapidly evolving homing CRISPR barcodes

Reza Kalhor et al.

NATURE METHODS (2017)

Article Biochemistry & Molecular Biology

Multiplexed Engineering and Analysis of Combinatorial Enhancer Activity in Single Cells

Shiqi Xie et al.

MOLECULAR CELL (2017)

Article Biochemistry & Molecular Biology

In situ genotyping of a pooled strain library after characterizing complex phenotypes

Michael J. Lawson et al.

MOLECULAR SYSTEMS BIOLOGY (2017)

Article Multidisciplinary Sciences

Synthetic recording and in situ readout of lineage information in single cells

Kirsten L. Frieda et al.

NATURE (2017)

Article Multidisciplinary Sciences

Polylox barcoding reveals haematopoietic stem cell fates realized in vivo

Weike Pei et al.

NATURE (2017)

Article Biochemical Research Methods

High-throughput, image-based screening of pooled genetic-variant libraries

George Emanuel et al.

NATURE METHODS (2017)

Article Biochemical Research Methods

Pooled CRISPR screening with single-cell transcriptome readout

Paul Datlinger et al.

NATURE METHODS (2017)

Review Genetics & Heredity

Building a lineage from single cells: genetic techniques for cell lineage tracking

Mollie B. Woodworth et al.

NATURE REVIEWS GENETICS (2017)

Article Biochemistry & Molecular Biology

Using high-throughput barcode sequencing to efficiently map connectomes

Ian D. Peikon et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biochemical Research Methods

Quantitative Analysis of Synthetic Cell Lineage Tracing Using Nuclease Barcoding

Stephanie Tzouanas Schmidt et al.

ACS SYNTHETIC BIOLOGY (2017)

Article Multidisciplinary Sciences

Examining Sources of Error in PCR by Single-Molecule Sequencing

Vladimir Potapov et al.

PLOS ONE (2017)

Article Biochemical Research Methods

Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data

Melanie Schirmer et al.

BMC BIOINFORMATICS (2016)

Article Biochemistry & Molecular Biology

Dissecting Immune Circuits by Linking CRISPR-Pooled Screens with Single-Cell RNA-Seq

Diego Adhemar Jaitin et al.

Article Multidisciplinary Sciences

Programmable editing of a target base in genomic DNA without double-stranded DNA cleavage

Alexis C. Komor et al.

NATURE (2016)

Article Biotechnology & Applied Microbiology

High-throughput identification of genotype-specific cancer vulnerabilities in mixtures of barcoded tumor cell lines

Channing Yu et al.

NATURE BIOTECHNOLOGY (2016)

Article Multidisciplinary Sciences

Whole-organism lineage tracing by combinatorial and cumulative genome editing

Aaron McKenna et al.

SCIENCE (2016)

Article Multidisciplinary Sciences

Continuous genetic recording with self-targeting CRISPR-Cas in human cells

Samuel D. Perli et al.

SCIENCE (2016)

Article Multidisciplinary Sciences

A model of breast cancer heterogeneity reveals vascular mimicry as a driver of metastasis

Elvin Wagenblast et al.

NATURE (2015)

Article Multidisciplinary Sciences

Quantitative evolutionary dynamics using high-resolution lineage tracking

Sasha F. Levy et al.

NATURE (2015)

Article Biochemistry & Molecular Biology

Studying clonal dynamics in response to cancer therapy using high-complexity barcoding

Hyo-eun C. Bhang et al.

NATURE MEDICINE (2015)

Article Neurosciences

Cell Lineage Analysis in Human Brain Using Endogenous Retroelements

Gilad D. Evrony et al.

NEURON (2015)

Article Biochemistry & Molecular Biology

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

Melanie Schirmer et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing

Darren A. Cusanovich et al.

SCIENCE (2015)

Article Biochemistry & Molecular Biology

Regulation of anti-sense transcription by Mot1p and NC2 via removal of TATA-binding protein (TBP) from the 3′-end of genes

Maria J. E. Koster et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

Neural Networks of the Mouse Neocortex

Brian Zingg et al.

Review Genetics & Heredity

The Yeast Deletion Collection: A Decade of Functional Genomics

Guri Giaever et al.

GENETICS (2014)

Article Multidisciplinary Sciences

Clonal dynamics of native haematopoiesis

Jianlong Sun et al.

NATURE (2014)

Article Multidisciplinary Sciences

A mesoscale connectome of the mouse brain

Seung Wook Oh et al.

NATURE (2014)

Letter Biochemical Research Methods

Improved vectors and genome-wide libraries for CRISPR screening

Neville E. Sanjana et al.

NATURE METHODS (2014)

Letter Biochemical Research Methods

Single-cell in situ RNA profiling by sequential hybridization

Eric Lubeck et al.

NATURE METHODS (2014)

Article Neurosciences

Multiplex Cell and Lineage Tracking with Combinatorial Labels

Karine Loulier et al.

NEURON (2014)

Article Biochemistry & Molecular Biology

In vivo generation of DNA sequence diversity for cellular barcoding

Ian D. Peikon et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Genome-Scale CRISPR-Cas9 Knockout Screening in Human Cells

Ophir Shalem et al.

SCIENCE (2014)

Article Multidisciplinary Sciences

Highly Multiplexed Subcellular RNA Sequencing in Situ

Je Hyuk Lee et al.

SCIENCE (2014)

Article Multidisciplinary Sciences

Diverse and heritable lineage imprinting of early haematopoietic progenitors

Shalin H. Naik et al.

NATURE (2013)

Article Biochemical Research Methods

In situ sequencing for RNA analysis in preserved tissue and cells

Rongqin Ke et al.

NATURE METHODS (2013)

Article Biochemical Research Methods

Improved tools for the Brainbow toolbox

Dawen Cai et al.

NATURE METHODS (2013)

Article Multidisciplinary Sciences

Multiplex Genome Engineering Using CRISPR/Cas Systems

Le Cong et al.

SCIENCE (2013)

Article Biochemical Research Methods

Statistical Analysis of Molecular Signal Recording

Joshua I. Glaser et al.

PLOS COMPUTATIONAL BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Lineage Tracing

Kai Kretzschmar et al.

Article Biochemical Research Methods

Counting absolute numbers of molecules using unique molecular identifiers

Teemu Kivioja et al.

NATURE METHODS (2012)

Article Multidisciplinary Sciences

Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes

Katsuyuki Shiroguchi et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemistry & Molecular Biology

Sequencing the Connectome

Anthony M. Zador et al.

PLOS BIOLOGY (2012)

Article Multidisciplinary Sciences

Wiring specificity in the direction-selectivity circuit of the retina

Kevin L. Briggman et al.

NATURE (2011)

Article Biochemistry & Molecular Biology

A method for counting PCR template molecules with application to next-generation sequencing

James A. Casbon et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

Counting individual DNA molecules by the stochastic attachment of diverse labels

Glenn K. Fu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

Detection and quantification of rare mutations with massively parallel sequencing

Isaac Kinde et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Virology

Viral Mutation Rates

Rafael Sanjuan et al.

JOURNAL OF VIROLOGY (2010)

Article Biochemistry & Molecular Biology

Quantitative phenotyping via deep barcode sequencing

Andrew M. Smith et al.

GENOME RESEARCH (2009)

Article Multidisciplinary Sciences

Recruitment of Antigen-Specific CD8+ T Cells in Response to Infection Is Markedly Efficient

Jeroen W. J. van Heijst et al.

SCIENCE (2009)

Review Ecology

DNA barcoding for ecologists

Alice Valentini et al.

TRENDS IN ECOLOGY & EVOLUTION (2009)

Article Immunology

Dissecting T cell lineage relationships by cellular barcoding

Koen Schepers et al.

JOURNAL OF EXPERIMENTAL MEDICINE (2008)

Article Biochemical Research Methods

Identification of genetic variants using bar-coded multiplexed sequencing

David W. Craig et al.

NATURE METHODS (2008)

Article Multidisciplinary Sciences

Profiling essential genes in human mammary cells by multiplex RNAi screening

Jose M. Silva et al.

SCIENCE (2008)

Article Biochemical Research Methods

Genomic variability within an organism exposes its cell lineage tree

D Frumkin et al.

PLOS COMPUTATIONAL BIOLOGY (2005)

Article Multidisciplinary Sciences

A resource for large-scale RNA-interference-based screens in mammals

PJ Paddison et al.

NATURE (2004)

Article Biochemistry & Molecular Biology

Molecular barcodes detect redundancy and contamination in hairpin-bisulfite PCR

BE Miner et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Multidisciplinary Sciences

Systematic functional analysis of the Caenorhabditis elegans genome using RNAi

RS Kamath et al.

NATURE (2003)

Article Multidisciplinary Sciences

Functional profiling of the Saccharomyces cerevisiae genome

G Giaever et al.

NATURE (2002)