期刊
JOURNAL OF PHYSICS D-APPLIED PHYSICS
卷 52, 期 1, 页码 -出版社
IOP PUBLISHING LTD
DOI: 10.1088/1361-6463/aae7ac
关键词
SMLM; SPP; cluster analysis; fibre analysis
资金
- Gordon and Betty Moore Foundation
- HHMI at HHMI's Janelia Research Campus
- European Research Council [337187]
- Marie Curie Career Integration Grant (CIG) [334303]
- European Research Council (ERC) [337187] Funding Source: European Research Council (ERC)
Single molecule localisation microscopy (SMLM), experimentally achieved over a decade ago, has become a routinely used analytical tool across the life sciences. A prevalent theme in the SMLM field is the need for quantitative analytical methods, owing to the point pattern nature of SMLM data. Whilst some forms of post processing analytics, for example cluster analysis, have been widely studied, others such as fibre analysis remain in their infancy. Here, we present two methods based on variants of Ripley's K-function for the analysis of fibrous structures in 3D and for dual colour data with one fibrous and one clustered molecular species. We demonstrate the methods on both simulated and experimental data of the actin cytoskeleton at the T cell immunological synapse.
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