相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Phage hunters: Computational strategies for finding phages in large-scale 'omics datasets
Bonnie L. Hurwitz et al.
VIRUS RESEARCH (2018)
Metagenomic Assembly and Prokaryotic Metagenome-Assembled Genome Sequences from the Northern Gulf of Mexico Dead Zone
J. Cameron Thrash et al.
MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2018)
Alignment-free d2* oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences
Nathan A. Ahlgren et al.
NUCLEIC ACIDS RESEARCH (2017)
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses
David Paez-Espino et al.
NUCLEIC ACIDS RESEARCH (2017)
Genome and epigenome of a novel marine Thaumarchaeota strain suggest viral infection, phosphorothioation DNA modification and multiple restriction systems
Nathan A. Ahlgren et al.
ENVIRONMENTAL MICROBIOLOGY (2017)
Thaumarchaeal ecotype distributions across the equatorial Pacific Ocean and their potential roles in nitrification and sinking flux attenuation
Alyson E. Santoro et al.
LIMNOLOGY AND OCEANOGRAPHY (2017)
Asgard archaea illuminate the origin of eukaryotic cellular complexity
Katarzyna Zaremba-Niedzwiedzka et al.
NATURE (2017)
Multiple origins of viral capsid proteins from cellular ancestors
Mart Krupovic et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2017)
Metabolic Roles of Uncultivated Bacterioplankton Lineages in the Northern Gulf of Mexico Dead Zone
J. Cameron Thrash et al.
MBIO (2017)
Genome diversity of marine phages recovered from Mediterranean metagenomes: Size matters
Mario Lopez-Perez et al.
PLOS GENETICS (2017)
Niche Partitioning of the N Cycling Microbial Community of an Offshore Oxygen Deficient Zone
Clara A. Fuchsman et al.
FRONTIERS IN MICROBIOLOGY (2017)
Putative archaeal viruses from the mesopelagic ocean
Dean R. Vik et al.
PEERJ (2017)
290 metagenome-assembled genomes from the Mediterranean Sea: a resource for marine microbiology
Benjamin J. Tully et al.
PEERJ (2017)
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
Donovan H. Parks et al.
NATURE MICROBIOLOGY (2017)
Novel Abundant Oceanic Viruses of Uncultured Marine Group II Euryarchaeota
Alon Philosof et al.
CURRENT BIOLOGY (2017)
Metagenomic investigation of the geologically unique Hellenic Volcanic Arc reveals a distinctive ecosystem with unexpected physiology
Anastasis Oulas et al.
ENVIRONMENTAL MICROBIOLOGY (2016)
Genomic potential for arsenic efflux and methylation varies among global Prochlorococcus populations
Jaclyn K. Saunders et al.
ISME JOURNAL (2016)
Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation
Barbara Bayer et al.
ISME JOURNAL (2016)
Viral metabolic reprogramming in marine ecosystems
Bonnie L. Hurwitz et al.
CURRENT OPINION IN MICROBIOLOGY (2016)
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
Simon Roux et al.
NATURE (2016)
Computational approaches to predict bacteriophage-host relationships
Robert A. Edwards et al.
FEMS MICROBIOLOGY REVIEWS (2016)
Ammonia and nitrite oxidation in the Eastern Tropical North Pacific
Xuefeng Peng et al.
GLOBAL BIOGEOCHEMICAL CYCLES (2015)
Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton
Jessica M. Labonte et al.
ISME JOURNAL (2015)
Structure and function of the global ocean microbiome
Shinichi Sunagawa et al.
SCIENCE (2015)
Patterns and ecological drivers of ocean viral communities
Jennifer R. Brum et al.
SCIENCE (2015)
Viral dark matter and virus-host interactions resolved from publicly available microbial genomes
Simon Roux et al.
ELIFE (2015)
VirSorter: mining viral signal from microbial genomic data
Simon Roux et al.
PEERJ (2015)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Single-cell genomics shedding light on marine Thaumarchaeota diversification
Haiwei Luo et al.
ISME JOURNAL (2014)
Seasonal variation in the metratranscriptomes of a Thaumarchaeota population from SE USA coastal waters
James T. Hollibaugh et al.
ISME JOURNAL (2014)
Viral tagging reveals discrete populations in Synechococcus viral genome sequence space
Li Deng et al.
NATURE (2014)
Ammonia-oxidizing archaea use the most energy-efficient aerobic pathway for CO2 fixation
Martin Koenneke et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Marine ammonia-oxidizing archaeal isolates display obligate mixotrophy and wide ecotypic variation
Wei Qin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Sulfur Oxidation Genes in Diverse Deep-Sea Viruses
Karthik Anantharaman et al.
SCIENCE (2014)
Archaeal viruses and bacteriophages: comparisons and contrasts
Maija K. Pietila et al.
TRENDS IN MICROBIOLOGY (2014)
Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta- genomics
Simon Roux et al.
ELIFE (2014)
The Wonderful World of Archaeal Viruses
David Prangishvili
ANNUAL REVIEW OF MICROBIOLOGY, VOL 67 (2013)
Archaeal amoA gene diversity points to distinct biogeography of ammonia-oxidizing Crenarchaeota in the ocean
Eva Sintes et al.
ENVIRONMENTAL MICROBIOLOGY (2013)
New insights into hydrothermal vent processes in the unique shallow-submarine arc-volcano, Kolumbo (Santorini), Greece
Stephanos P. Kilias et al.
SCIENTIFIC REPORTS (2013)
Metabolic reprogramming by viruses in the sunlit and dark ocean
Bonnie L. Hurwitz et al.
GENOME BIOLOGY (2013)
Physiology and Diversity of Ammonia-Oxidizing Archaea
David A. Stahl et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 66 (2012)
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
Yu Peng et al.
BIOINFORMATICS (2012)
Phylogenomics of T4 cyanophages: lateral gene transfer in the 'core' and origins of host genes
J. Cesar Ignacio-Espinoza et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
A thaumarchaeal provirus testifies for an ancient association of tailed viruses with archaea
Mart Krupovic et al.
BIOCHEMICAL SOCIETY TRANSACTIONS (2011)
Aligning short reads to reference alignments and trees
Simon A. Berger et al.
BIOINFORMATICS (2011)
Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism
Luke R. Thompson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Prodigal: prokaryotic gene recognition and translation initiation site identification
Doug Hyatt et al.
BMC BIOINFORMATICS (2010)
Genomic analysis of oceanic cyanobacterial myoviruses compared with T4-like myoviruses from diverse hosts and environments
Matthew B. Sullivan et al.
ENVIRONMENTAL MICROBIOLOGY (2010)
Activity, abundance and diversity of nitrifying archaea and bacteria in the central California Current
Alyson E. Santoro et al.
ENVIRONMENTAL MICROBIOLOGY (2010)
Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea
C. B. Walker et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Cyanobacterial psbA gene family: optimization of oxygenic photosynthesis
Paula Mulo et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2009)
Molecular and biogeochemical evidence for ammonia oxidation by marine Crenarchaeota in the Gulf of California
J. Michael Beman et al.
ISME JOURNAL (2008)
Viral photosynthetic reaction center genes and transcripts in the marine environment
Itai Sharon et al.
ISME JOURNAL (2007)
Viruses of the Archaea: a unifying view
David Prangishvili et al.
NATURE REVIEWS MICROBIOLOGY (2006)
Distribution and activity of Bacteria and Archaea in the deep water masses of the North Atlantic
Eva Teira et al.
LIMNOLOGY AND OCEANOGRAPHY (2006)
Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts
Matthew B. Sullivan et al.
PLOS BIOLOGY (2006)
Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota
SJ Hallam et al.
PLOS BIOLOGY (2006)
Photosynthesis genes in marine viruses yield proteins during host infection
D Lindell et al.
NATURE (2005)
Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
CA Francis et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Isolation of an autotrophic ammonia-oxidizing marine archaeon
M Könneke et al.
NATURE (2005)
Protein homology detection by HMM-HMM comparison
J Söding
BIOINFORMATICS (2005)
Cyanophages infecting the oceanic cyanobacterium Prochlorococcus
MB Sullivan et al.
NATURE (2003)
Archaeal dominance in the mesopelagic zone of the Pacific Ocean
MB Karner et al.
NATURE (2001)