相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Nonlinear Dynamics in Gene Regulation Promote Robustness and Evolvability of Gene Expression Levels
Arno Steinacher et al.
PLOS ONE (2016)
Epistasis in protein evolution
Tyler N. Starr et al.
PROTEIN SCIENCE (2016)
Intrinsic limits to gene regulation by global crosstalk
Tamar Friedlander et al.
NATURE COMMUNICATIONS (2016)
Dynamics of Transcription Factor Binding Site Evolution
Murat Tugrul et al.
PLOS GENETICS (2015)
Simulations of Enhancer Evolution Provide Mechanistic Insights into Gene Regulation
Thyago Duque et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Comparison of the theoretical and real-world evolutionary potential of a genetic circuit
M. Razo-Mejia et al.
PHYSICAL BIOLOGY (2014)
The Robustness and Evolvability of Transcription Factor Binding Sites
Joshua L. Payne et al.
SCIENCE (2014)
A Promiscuous Intermediate Underlies the Evolution of LEAFY DNA Binding Specificity
Camille Sayou et al.
SCIENCE (2014)
Duplication of a promiscuous transcription factor drives the emergence of a new regulatory network
Ksenia Pougach et al.
NATURE COMMUNICATIONS (2014)
Evaluation of methods for modeling transcription factor sequence specificity
Matthew T. Weirauch et al.
NATURE BIOTECHNOLOGY (2013)
The Underlying Molecular and Network Level Mechanisms in the Evolution of Robustness in Gene Regulatory Networks
Mario Pujato et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Improved Models for Transcription Factor Binding Site Identification Using Nonindependent Interactions
Yue Zhao et al.
GENETICS (2012)
Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence
Patricia J. Wittkopp et al.
NATURE REVIEWS GENETICS (2012)
The role of robustness in phenotypic adaptation and innovation
Andreas Wagner
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
Accurate Prediction of Gene Expression by Integration of DNA Sequence Statistics with Detailed Modeling of Transcription Regulation
Jose M. G. Vilar
BIOPHYSICAL JOURNAL (2010)
Evolution of Transcription Networks - Lessons from Yeasts
Hao Li et al.
CURRENT BIOLOGY (2010)
Mutational robustness can facilitate adaptation
Jeremy A. Draghi et al.
NATURE (2010)
Determining the specificity of protein-DNA interactions
Gary D. Stormo et al.
NATURE REVIEWS GENETICS (2010)
Using deep sequencing to characterize the biophysical mechanism of a transcriptional regulatory sequence
Justin B. Kinney et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Degeneracy: a link between evolvability, robustness and complexity in biological systems
James M. Whitacre
THEORETICAL BIOLOGY AND MEDICAL MODELLING (2010)
Epistasis in a quantitative trait captured by a molecular model of transcription factor interactions
Jason Gertz et al.
THEORETICAL POPULATION BIOLOGY (2010)
Experimental determination of the evolvability of a transcription factor
Sebastian J. Maerkl et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
P22 c2 repressor-operator complex: Mechanisms of direct and indirect readout
Derrick Watkins et al.
BIOCHEMISTRY (2008)
Evolvability and hierarchy in rewired bacterial gene networks
Mark Isalan et al.
NATURE (2008)
Opinion - Is evolvability evolvable?
Massimo Pigliucci
NATURE REVIEWS GENETICS (2008)
Energy-dependent fitness:: A quantitative model for the evolution of yeast transcription factor binding sites
Ville Mustonen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Growth-rate-dependent partitioning of RNA polymerases in bacteria
Stefan Klumpp et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Evolution of eukaryotic transcription circuits
Brian B. Tuch et al.
SCIENCE (2008)
The gene regulatory logic of transcription factor evolution
Guenter P. Wagner et al.
TRENDS IN ECOLOGY & EVOLUTION (2008)
Evolutionary models for formation of network motifs and modularity in the Saccharomyces transcription factor network
Jonathan J. Ward et al.
PLOS COMPUTATIONAL BIOLOGY (2007)
Innovation and robustness in complex regulatory gene networks
S. Ciliberti et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
The distribution of fitness effects of new mutations
Adam Eyre-Walker et al.
NATURE REVIEWS GENETICS (2007)
Emerging principles of regulatory evolution
Benjamin Prud'homme et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Conservation and diversity in the immunity regions of wild phages with the immunity specificity of phage λ
Patrick H. Degnan et al.
MOLECULAR MICROBIOLOGY (2007)
A systems approach to measuring the binding energy landscapes of transcription factors
Sebastian J. Maerkl et al.
SCIENCE (2007)
From biophysics to evolutionary genetics: statistical aspects of gene regulation
Michael Laessig
BMC BIOINFORMATICS (2007)
Transcriptional regulation by competing transcription factor modules
Rutger Hermsen et al.
PLOS COMPUTATIONAL BIOLOGY (2006)
Evolutionary dynamics of prokaryotic transcriptional regulatory networks
MM Babu et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
Bacterial regulatory networks are extremely flexible in evolution
Irma Lozada-Chavez et al.
NUCLEIC ACIDS RESEARCH (2006)
Evolution at two levels: On genes and form
SB Carroll
PLOS BIOLOGY (2005)
Transcriptional regulation by the numbers: models
L Bintu et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2005)
Functional evolution of a cis-regulatory module
MZ Ludwig et al.
PLOS BIOLOGY (2005)
In vivo non-specific binding of λ CI and Cro repressors is significant
A Bakk et al.
FEBS LETTERS (2004)
Why the lysogenic state of phage lambda is so stable: A mathematical modeling approach
M Santillan et al.
BIOPHYSICAL JOURNAL (2004)
Adaptive evolution of transcription factor binding sites -: art. no. 42
J Berg et al.
BMC EVOLUTIONARY BIOLOGY (2004)
MONKEY: identifying conserved transcription-factor binding sites in multiple alignments using a binding site-specific evolutionary model
AM Moses et al.
GENOME BIOLOGY (2004)
Physical constraints and functional characteristics of transcription factor-DNA interaction
U Gerland et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Protein-DNA interactions: Amino acid conservation and the effects of mutations on binding specificity
NM Luscombe et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications
T Nagai et al.
NATURE BIOTECHNOLOGY (2002)
A comparative study of the immunity region of lambdoid phages including shiga-toxin-converting phages: molecular basis for cross immunity.
KR Fattah et al.
GENES & GENETIC SYSTEMS (2000)
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
KA Datsenko et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2000)