相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。ModelFinder: fast model selection for accurate phylogenetic estimates
Subha Kalyaanamoorthy et al.
NATURE METHODS (2017)
Correspondence: Spontaneous secondary mutations confound analysis of the essential two-component system WalKR in Staphylococcus aureus
Ian R. Monk et al.
NATURE COMMUNICATIONS (2017)
VFDB 2016: hierarchical and refined dataset for big data analysis-10 years on
Lihong Chen et al.
NUCLEIC ACIDS RESEARCH (2016)
Do Staphylococcus epidermidis Genetic Clusters Predict Isolation Sources?
Isaiah Tolo et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2016)
PHASTER: a better, faster version of the PHAST phage search tool
David Arndt et al.
NUCLEIC ACIDS RESEARCH (2016)
Vancomycin in the treatment of methicillin-resistant Staphylococcus aureus - a clinician's guide to the science informing current practice
Jean Y. H. Lee et al.
EXPERT REVIEW OF ANTI-INFECTIVE THERAPY (2015)
Rifampicin-resistance, rpoB polymorphism and RNA polymerase genetic engineering
Pietro Alifano et al.
JOURNAL OF BIOTECHNOLOGY (2015)
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
Lam-Tung Nguyen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2015)
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Nicholas J. Croucher et al.
NUCLEIC ACIDS RESEARCH (2015)
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
Jiajie Zhang et al.
BIOINFORMATICS (2014)
Prokka: rapid prokaryotic genome annotation
Torsten Seemann
BIOINFORMATICS (2014)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Coagulase-Negative Staphylococci
Karsten Becker et al.
CLINICAL MICROBIOLOGY REVIEWS (2014)
Differing lifestyles of Staphylococcus epidermidis as revealed through Bayesian clustering of multilocus sequence types
Jonathan C. Thomas et al.
INFECTION GENETICS AND EVOLUTION (2014)
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis
Remco Bouckaert et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
The impact of drug resistance on Mycobacterium tuberculosis physiology: what can we learn from rifampicin?
Anastasia Koch et al.
EMERGING MICROBES & INFECTIONS (2014)
Causal Role of Single Nucleotide Polymorphisms within the mprF Gene of Staphylococcus aureus in Daptomycin Resistance
Soo-Jin Yang et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2013)
Antimicrobial-Resistant Pathogens Associated with Healthcare-Associated Infections: Summary of Data Reported to the National Healthcare Safety Network at the Centers for Disease Control and Prevention, 2009-2010
Dawn M. Sievert et al.
INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY (2013)
The RpoB H148Y Rifampicin Resistance Mutation and an Active Stringent Response Reduce Virulence and Increase Resistance to Innate Immune Responses in Staphylococcus aureus
Wei Gao et al.
JOURNAL OF INFECTIOUS DISEASES (2013)
Ultrafast Approximation for Phylogenetic Bootstrap
Bui Quang Minh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software
Lu Cheng et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Molecular Epidemiology of Staphylococcus epidermidis Clinical Isolates from US Hospitals
Rodrigo E. Mendes et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Structure, function and diversity of the healthy human microbiome
Curtis Huttenhower et al.
NATURE (2012)
SLiCE: a novel bacterial cell extract-based DNA cloning method
Yongwei Zhang et al.
NUCLEIC ACIDS RESEARCH (2012)
Transforming the Untransformable: Application of Direct Transformation To Manipulate Genetically Staphylococcus aureus and Staphylococcus epidermidis
Ian R. Monk et al.
MBIO (2012)
Staphylococcus epidermidis pan-genome sequence analysis reveals diversity of skin commensal and hospital infection-associated isolates
Sean Conlan et al.
GENOME BIOLOGY (2012)
Identification of fusB-Mediated Fusidic Acid Resistance Islands in Staphylococcus epidermidis Isolates
Hsiao-Jan Chen et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2011)
Mutation of RNA Polymerase β Subunit (rpoB) Promotes hVISA-to-VISA Phenotypic Conversion of Strain Mu3
Miki Matsuo et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2011)
Proteinortho: Detection of (Co-)orthologs in large-scale analysis
Marcus Lechner et al.
BMC BIOINFORMATICS (2011)
Clinical Practice Guidelines by the Infectious Diseases Society of America for the Treatment of Methicillin-Resistant Staphylococcus Aureus Infections in Adults and Children
Catherine Liu et al.
CLINICAL INFECTIOUS DISEASES (2011)
Antibiotic susceptibility of coagulase-negative staphylococci (CoNS): emergence of teicoplanin-non-susceptible CoNS strains with inducible resistance to vancomycin
Xiao Xue Ma et al.
JOURNAL OF MEDICAL MICROBIOLOGY (2011)
Polyphyletic Emergence of Linezolid-Resistant Staphylococci in the United States
Agnes Wong et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2010)
An RpoB Mutation Confers Dual Heteroresistance to Daptomycin and Vancomycin in Staphylococcus aureus
Longzhu Cui et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2010)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Reduced Vancomycin Susceptibility in Staphylococcus aureus, Including Vancomycin-Intermediate and Heterogeneous Vancomycin-Intermediate Strains: Resistance Mechanisms, Laboratory Detection, and Clinical Implications
Benjamin P. Howden et al.
CLINICAL MICROBIOLOGY REVIEWS (2010)
Effect of vancomycin plus rifampicin in the treatment of nosocomial methicillin-resistant Staphylococcus aureus pneumonia
Young Ju Jung et al.
CRITICAL CARE MEDICINE (2010)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Antibiotic susceptibility among Staphylococcus epidermidis isolated from prosthetic joint infections with special focus on rifampicin and variability of the rpoB gene
B. Hellmark et al.
CLINICAL MICROBIOLOGY AND INFECTION (2009)
Staphylococcus epidermidis - the 'accidental' pathogen
Michael Otto
NATURE REVIEWS MICROBIOLOGY (2009)
Addition of rifampin to standard therapy for treatment of native valve infective endocarditis caused by Staphylococcus aureus
David J. Riedel et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2008)
High prevalence of resistance to fusidic acid in clinical isolates of Staphylococcus epidermidis
F. McLaws et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2008)
Vancomycin heteroresistance and biofilm formation in Staphylococcus epidermidis from food
Shona Gazzola et al.
MICROBIOLOGY-SGM (2008)
Inferring a population structure for Staphylococcus epidermidis from multilocus sequence typing data
M. Miragaia et al.
JOURNAL OF BACTERIOLOGY (2007)
Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain
SR Gill et al.
JOURNAL OF BACTERIOLOGY (2005)
Molecular epidemiology of coagulase-negative staphylococci causing sepsis in a neonatal intensive care unit over an 11-year period
TG Krediet et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2004)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
APE: Analyses of Phylogenetics and Evolution in R language
E Paradis et al.
BIOINFORMATICS (2004)
Genome-based analysis of virulence genes in a non-biofilm-forming Staphylococcus epidermidis strain (ATCC 12228)
YQ Zhang et al.
MOLECULAR MICROBIOLOGY (2003)
Staphylococcus and biofilms
F Gotz
MOLECULAR MICROBIOLOGY (2002)