相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Strong Genome-Wide Selection Early in the Evolution of Prochlorococcus Resulted in a Reduced Genome through the Loss of a Large Number of Small Effect Genes
Zhiyi Sun et al.
PLOS ONE (2014)
Consed: a graphical editor for next-generation sequencing
David Gordon et al.
BIOINFORMATICS (2013)
Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis
Rex R. Malmstrom et al.
ISME JOURNAL (2013)
Genetic diversity in cultured and wild marine cyanomyoviruses reveals phosphorus stress as a strong selective agent
Libusha Kelly et al.
ISME JOURNAL (2013)
Present and future global distributions of the marine Cyanobacteria Prochlorococcus and Synechococcus
Pedro Flombaum et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms
Marco Falda et al.
BMC BIOINFORMATICS (2012)
The Infinitely Many Genes Model for the Distributed Genome of Bacteria
Franz Baumdicker et al.
GENOME BIOLOGY AND EVOLUTION (2012)
Hybrid error correction and de novo assembly of single-molecule sequencing reads
Sergey Koren et al.
NATURE BIOTECHNOLOGY (2012)
ProPortal: a resource for integrated systems biology of Prochlorococcus and its phage
Libusha Kelly et al.
NUCLEIC ACIDS RESEARCH (2012)
Integrated metatranscriptomic and metagenomic analyses of stratified microbial assemblages in the open ocean
Yanmei Shi et al.
ISME JOURNAL (2011)
Transcriptome response of high- and low-light-adapted Prochlorococcus strains to changing iron availability
Anne W. Thompson et al.
ISME JOURNAL (2011)
Dependence of the Cyanobacterium Prochlorococcus on Hydrogen Peroxide Scavenging Microbes for Growth at the Ocean's Surface
J. Jeffrey Morris et al.
PLOS ONE (2011)
Accelerated Profile HMM Searches
Sean R. Eddy
PLOS COMPUTATIONAL BIOLOGY (2011)
Widespread known and novel phosphonate utilization pathways in marine bacteria revealed by functional screening and metagenomic analyses
Asuncion Martinez et al.
ENVIRONMENTAL MICROBIOLOGY (2010)
Metagenome of the Mediterranean deep chlorophyll maximum studied by direct and fosmid library 454 pyrosequencing
Rohit Ghai et al.
ISME JOURNAL (2010)
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
Aaron E. Darling et al.
PLOS ONE (2010)
Unlocking Short Read Sequencing for Metagenomics
Sebastien Rodrigue et al.
PLOS ONE (2010)
Ecosystem-specific selection pressures revealed through comparative population genomics
Maureen L. Coleman et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Characterization of Prochlorococcus clades from iron-depleted oceanic regions
Douglas B. Rusch et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre
Rachel S. Poretsky et al.
ENVIRONMENTAL MICROBIOLOGY (2009)
Occurrence of phosphate acquisition genes in Prochlorococcus cells from different ocean regions
Adam C. Martiny et al.
ENVIRONMENTAL MICROBIOLOGY (2009)
Intertwined Evolutionary Histories of Marine Synechococcus and Prochlorococcus marinus
Olga Zhaxybayeva et al.
GENOME BIOLOGY AND EVOLUTION (2009)
Whole Genome Amplification and De novo Assembly of Single Bacterial Cells
Sebastien Rodrigue et al.
PLOS ONE (2009)
The RAST server: Rapid annotations using subsystems technology
Ramy K. Aziz et al.
BMC GENOMICS (2008)
Microbial community gene expression in ocean surface waters
Jorge. Frias-Lopez et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Unraveling the genomic mosaic of a ubiquitous genus of marine cyanobacteria
Alexis Dufresne et al.
GENOME BIOLOGY (2008)
Patterns and implications of gene gain and loss in the evolution of Prochlorococcus
Gregory C. Kettler et al.
PLOS GENETICS (2007)
Culturing the marine cyanobacterium Prochlorococcus
Lisa R. Moore et al.
LIMNOLOGY AND OCEANOGRAPHY-METHODS (2007)
The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through Eastern Tropical Pacific
Douglas B. Rusch et al.
PLOS BIOLOGY (2007)
Influence of light and temperature on Prochlorococcus ecotype distributions in the Atlantic Ocean
Erik R. Zinser et al.
LIMNOLOGY AND OCEANOGRAPHY (2007)
Genome sequence of Synechococcus CC9311:: Insights into adaptation to a coastal environment
Brian Palenik et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Phosphate acquisition genes in Prochlorococcus ecotypes:: Evidence for genome-wide adaptation
Adam C. Martiny et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Genomic islands and the ecology and evolution of Prochlorococcus
ML Coleman et al.
SCIENCE (2006)
Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients
ZI Johnson et al.
SCIENCE (2006)
Measurement of Prochlorococcus ecotypes using real-time polymerase chain reaction reveals different abundances of genotypes with similar light physiologies
NA Ahlgren et al.
ENVIRONMENTAL MICROBIOLOGY (2006)
Accelerated evolution associated with genome reduction in a free-living prokaryote
A Dufresne et al.
GENOME BIOLOGY (2005)
Environmental genome shotgun sequencing of the Sargasso Sea
JC Venter et al.
SCIENCE (2004)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
ARB:: a software environment for sequence data
W Ludwig et al.
NUCLEIC ACIDS RESEARCH (2004)
The genome of a motile marine Synechococcus
B Palenik et al.
NATURE (2003)
Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation
G Rocap et al.
NATURE (2003)
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome
A Dufresne et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Resolution of Prochlorococcus and Synechococcus ecotypes by using 16S-23S ribosomal DNA internal transcribed spacer sequences
G Rocap et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)
Presence of phycoerythrin in two strains of Prochlorococcus (Cyanobacteria) isolated from the subtropical north Pacific Ocean
S Penno et al.
JOURNAL OF PHYCOLOGY (2000)