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Sergei A. Solonenko et al.
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Rachel Marine et al.
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Kyoung-Ho Kim et al.
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Unraveling the viral tapestry (from inside the capsid out)
Shawn W. Polson et al.
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Linear amplification for deep sequencing
Wieteke A. M. Hoeijmakers et al.
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Mart Krupovic et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2011)
Multiple displacement amplification compromises quantitative analysis of metagenomes
Suzan Yilmaz et al.
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Biases in Illumina transcriptome sequencing caused by random hexamer priming
Kasper D. Hansen et al.
NUCLEIC ACIDS RESEARCH (2010)
Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes
Matthew R. Henn et al.
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Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
Andrew Adey et al.
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The Sequence Alignment/Map format and SAMtools
Heng Li et al.
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Iwanka Kozarewa et al.
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Laboratory procedures to generate viral metagenomes
Rebecca V. Thurber et al.
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Dana Willner et al.
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Amplification of uncultured single-stranded DNA viruses from rice paddy soil
Kyoung-Ho Kim et al.
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Successful Amplification of Degraded DNA for Use With High-Throughput SNP Genotyping Platforms
Simon Mead et al.
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Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology
Erik K. Binga et al.
ISME JOURNAL (2008)
Functional metagenomic profiling of nine biomes
Elizabeth A. Dinsdale et al.
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Biodiversity and biogeography of phages in modern stromatolites and thrombolites
Christelle Desnues et al.
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A Bioinformatician's Guide to Metagenomics
Victor Kunin et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2008)
Microbial Ecology of Four Coral Atolls in the Northern Line Islands
Elizabeth A. Dinsdale et al.
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Use of simulated data sets to evaluate the fidelity of metagenomic processing methods
Konstantinos Mavromatis et al.
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Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing
Robert Pinard et al.
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Environmental whole-genome amplification to access microbial populations in contaminated sediments
Carl B. Abulencia et al.
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Ligation overcomes terminal underrepresentation in multiple displacement amplification of linear DNA
S Panelli et al.
BIOTECHNIQUES (2005)
Genomic DNA amplification from a single bacterium
A Raghunathan et al.
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Genome-wide single-nucleotide polymorphism arrays demonstrate high fidelity of multiple displacement-based whole-genome amplification
MV Tzvetkov et al.
ELECTROPHORESIS (2005)
Whole genome analysis of genetic alterations in small DNA samples using hyperbranched strand displacement amplification and array-CGH
JM Lage et al.
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Comparative phage genomics and the evolution of Siphoviridae: insights from dairy phages
H Brussow et al.
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