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Paul Flicek et al.
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Next-generation sequencing and large genome assemblies
Joseph Henson et al.
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Next generation shotgun sequencing and the challenges of de novo genome assembly
Stephen Schlebusch et al.
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Laura B. Scheinfeldt et al.
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SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Ruibang Luo et al.
GIGASCIENCE (2012)
Assemblathon 1: A competitive assessment of de novo short read assembly methods
Dent Earl et al.
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Jacob O. Kitzman et al.
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Limitations of next-generation genome sequence assembly
Can Alkan et al.
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Assemblies: the good, the bad, the ugly
Ewan Birney
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Giuseppe Narzisi et al.
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De novo assembly of short sequence reads
Konrad Paszkiewicz et al.
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An overview of the current status of eukaryote gene prediction strategies
Roy D. Sleator
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Assembly algorithms for next-generation sequencing data
Jason R. Miller et al.
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Ray: Simultaneous Assembly of Reads from a Mix of High-Throughput Sequencing Technologies
Sebastien Boisvert et al.
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The sequence and de novo assembly of the giant panda genome
Ruiqiang Li et al.
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High-resolution human genome structure by single-molecule analysis
Brian Teague et al.
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Detection and correction of false segmental duplications caused by genome mis-assembly
David R. Kelley et al.
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Quake: quality-aware detection and correction of sequencing errors
David R. Kelley et al.
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The Sequence Alignment/Map format and SAMtools
Heng Li et al.
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Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
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De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae
Josephine A. Reinhardt et al.
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ABySS: A parallel assembler for short read sequence data
Jared T. Simpson et al.
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Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species
David Haussler et al.
JOURNAL OF HEREDITY (2009)
Assessing the gene space in draft genomes
Genis Parra et al.
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Patrick S. Schnable et al.
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Daniel R. Zerbino et al.
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Validation of rice genome sequence by optical mapping
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CEGMA: a pipeline to accurately annotate core genes in eukaryotic genornes
Genis Parra et al.
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Whole-genome re-sequencing
David R. Bentley
CURRENT OPINION IN GENETICS & DEVELOPMENT (2006)
Alignment of optical maps
A Valouev et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2006)
A microfluidic system for large DNA molecule arrays
ET Dimalanta et al.
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Recent advances in gene structure prediction
MR Brent et al.
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PF Smith et al.
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C Rico et al.
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An Eulerian path approach to DNA fragment assembly
PA Pevzner et al.
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ES Lander et al.
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