相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。DHSpred: support-vector-machine-based human DNase I hypersensitive sites prediction using the optimal features selected by random forest
Balachandran Manavalan et al.
ONCOTARGET (2018)
iLoc-lncRNA: predict the subcellular location of lncRNAs by incorporating octamer composition into general PseKNC
Zhen-Dong Su et al.
BIOINFORMATICS (2018)
Machine-Learning-Based Prediction of Cell-Penetrating Peptides and Their Uptake Efficiency with Improved Accuracy
Balachandran Manayalan et al.
JOURNAL OF PROTEOME RESEARCH (2018)
AmPEP: Sequence-based prediction of antimicrobial peptides using distribution patterns of amino acid properties and random forest
Pratiti Bhadra et al.
SCIENTIFIC REPORTS (2018)
PVP-SVM: Sequence-Based Prediction of Phage Virion Proteins Using a Support Vector Machine
Balachandran Manavalan et al.
FRONTIERS IN MICROBIOLOGY (2018)
In Silico Approach for Prediction of Antifungal Peptides
Piyush Agrawal et al.
FRONTIERS IN MICROBIOLOGY (2018)
AIPpred: Sequence-Based Prediction of Anti-inflammatory Peptides Using Random Forest
Balachandran Manavalan et al.
FRONTIERS IN PHARMACOLOGY (2018)
iRNA-3typeA: Identifying Three Types of Modification at RNA's Adenosine Sites
Wei Chen et al.
MOLECULAR THERAPY-NUCLEIC ACIDS (2018)
FAME 2: Simple and Effective Machine Learning Model of Cytochrome P450 Regioselectivity
Martin Sicho et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2017)
BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes
Martin Closter Jespersen et al.
NUCLEIC ACIDS RESEARCH (2017)
In silico prediction of multiple-category classification model for cytochrome P450 inhibitors and non-inhibitors using machine-learning method
J. H. Lee et al.
SAR AND QSAR IN ENVIRONMENTAL RESEARCH (2017)
MLACP: machine-learning-based prediction of anticancer peptides
Balachandran Manavalan et al.
ONCOTARGET (2017)
iDTI-ESBoost: Identification of Drug Target Interaction Using Evolutionary and Structural Features with Boosting
Farshid Rayhan et al.
SCIENTIFIC REPORTS (2017)
PhosphoPredict: A bioinformatics tool for prediction of human kinase-specific phosphorylation substrates and sites by integrating heterogeneous feature selection
Jiangning Song et al.
SCIENTIFIC REPORTS (2017)
Computational tools for exploring sequence databases as a resource for antimicrobial peptides
W. F. Porto et al.
BIOTECHNOLOGY ADVANCES (2017)
iDHS-EL: identifying DNase I hypersensitive sites by fusing three different modes of pseudo nucleotide composition into an ensemble learning framework
Bin Liu et al.
BIOINFORMATICS (2016)
Inadequate Reference Datasets Biased toward Short Non-epitopes Confound B-cell Epitope Prediction
Kh. Shamsur Rahman et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2016)
An Introduction to B-Cell Epitope Mapping and In Silico Epitope Prediction
Lenka Potocnakova et al.
JOURNAL OF IMMUNOLOGY RESEARCH (2016)
The immune epitope database (IEDB) 3.0
Randi Vita et al.
NUCLEIC ACIDS RESEARCH (2015)
Computer-Aided Virtual Screening and Designing of Cell-Penetrating Peptides
Ankur Gautam et al.
CELL-PENETRATING PEPTIDES: METHODS AND PROTOCOLS, 2ND EDITION (2015)
EPMLR: sequence-based linear B-cell epitope prediction method using multiple linear regression
Yao Lian et al.
BMC BIOINFORMATICS (2014)
Current approaches to fine mapping of antigen-antibody interactions
W. Mark Abbott et al.
IMMUNOLOGY (2014)
SEPPA 2.0-more refined server to predict spatial epitope considering species of immune host and subcellular localization of protein antigen
Tao Qi et al.
NUCLEIC ACIDS RESEARCH (2014)
Identification of B-cell epitopes in an antigen for inducing specific class of antibodies
Sudheer Gupta et al.
BIOLOGY DIRECT (2013)
iLoc-Animal: a multi-label learning classifier for predicting subcellular localization of animal proteins
Wei-Zhong Lin et al.
MOLECULAR BIOSYSTEMS (2013)
Structural analysis of B-cell epitopes in antibody:protein complexes
Jens Vindahl Kringelum et al.
MOLECULAR IMMUNOLOGY (2013)
Evolutionary, Structural and Functional Interplay of the IκB Family Members
Shaherin Basith et al.
PLOS ONE (2013)
Improved Method for Linear B-Cell Epitope Prediction Using Antigen's Primary Sequence
Harinder Singh et al.
PLOS ONE (2013)
Ensemble Approaches for Regression: A Survey
Joao Mendes-Moreira et al.
ACM COMPUTING SURVEYS (2012)
Fuzzy clustering of physicochemical and biochemical properties of amino Acids
Indrajit Saha et al.
AMINO ACIDS (2012)
TANGLE: Two-Level Support Vector Regression Approach for Protein Backbone Torsion Angle Prediction from Primary Sequences
Jiangning Song et al.
PLOS ONE (2012)
SVMTriP: A Method to Predict Antigenic Epitopes Using Support Vector Machine to Integrate Tri-Peptide Similarity and Propensity
Bo Yao et al.
PLOS ONE (2012)
Reliable B Cell Epitope Predictions: Impacts of Method Development and Improved Benchmarking
Jens Vindahl Kringelum et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Promotion of intramuscular fat accumulation in porcine muscle by nutritional regulation
Masaya Katsumata
ANIMAL SCIENCE JOURNAL (2011)
Prediction of conformational B-cell epitopes from 3D structures by random forests with a distance-based feature
Wen Zhang et al.
BMC BIOINFORMATICS (2011)
Molecular modeling-based evaluation of dual function of IκBζ ankyrin repeat domain in toll-like receptor signaling
Balachandran Manavalan et al.
JOURNAL OF MOLECULAR RECOGNITION (2011)
In Silico Approach to Inhibition of Signaling Pathways of Toll-Like Receptors 2 and 4 by ST2L
Shaherin Basith et al.
PLOS ONE (2011)
Comparative Analysis of Species-Specific Ligand Recognition in Toll-Like Receptor 8 Signaling: A Hypothesis
Rajiv Gandhi Govindaraj et al.
PLOS ONE (2011)
Molecular Modeling-Based Evaluation of hTLR10 and Identification of Potential Ligands in Toll-Like Receptor Signaling
Rajiv Gandhi Govindaraj et al.
PLOS ONE (2010)
Structure-Function Relationship of Cytoplasmic and Nuclear IκB Proteins: An In Silico Analysis
Balachandran Manavalan et al.
PLOS ONE (2010)
Molecular modeling of the reductase domain to elucidate the reaction mechanism of reduction of peptidyl thioester into its corresponding alcohol in non-ribosomal peptide synthetases
Balachandran Manavalan et al.
BMC STRUCTURAL BIOLOGY (2010)
COBEpro: a novel system for predicting continuous B-cell epitopes
Michael J. Sweredoski et al.
PROTEIN ENGINEERING DESIGN & SELECTION (2009)
ElliPro: a new structure-based tool for the prediction of antibody epitopes
Julia Ponomarenko et al.
BMC BIOINFORMATICS (2008)
Predicting linear B-cell epitopes using string kernels
Yasser El-Manzalawy et al.
JOURNAL OF MOLECULAR RECOGNITION (2008)
AAindex: amino acid index database, progress report 2008
Shuichi Kawashima et al.
NUCLEIC ACIDS RESEARCH (2008)
Antibody-protein interactions: benchmark datasets and prediction tools evaluation
Julia V. Ponomarenko et al.
BMC STRUCTURAL BIOLOGY (2007)
MemType-2L: A Web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM
Kuo-Chen Chou et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2007)
Signal-CF: A subsite-coupled and window-fusing approach for predicting signal peptides
Kuo-Chen Chou et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2007)
Prediction of continuous B-cell epitopes in an antigen using recurrent neural network
Sudipto Saha et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)
Cooperative coevolution of artificial neural network ensembles for pattern classification
N García-Pedrajas et al.
IEEE TRANSACTIONS ON EVOLUTIONARY COMPUTATION (2005)
APDbase: Amino acid Physico-chemical properties Database
Venkatarajan S. Mathura et al.
BIOINFORMATION (2005)
Antibody-mediated phagocytosis of the amyloid β-peptide in microglia is differentially modulated by C1q
SD Webster et al.
JOURNAL OF IMMUNOLOGY (2001)
The IDB and IEDB: intron sequence and evolution databases
NJ Schisler et al.
NUCLEIC ACIDS RESEARCH (2000)