期刊
GENOME BIOLOGY
卷 12, 期 8, 页码 -出版社
BMC
DOI: 10.1186/gb-2011-12-8-r83
关键词
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资金
- Dana-Farber Cancer Institute
- National Basic Research Program of China grant 973 Program [2010CB944904]
- NIH [HG004069-04S1, DK074967, DK062434]
- NATIONAL HUMAN GENOME RESEARCH INSTITUTE [R01HG004069] Funding Source: NIH RePORTER
- NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES [U19DK062434, R01DK074967, R56DK074967] Funding Source: NIH RePORTER
The increasing volume of ChIP-chip and ChIP-seq data being generated creates a challenge for standard, integrative and reproducible bioinformatics data analysis platforms. We developed a web-based application called Cistrome, based on the Galaxy open source framework. In addition to the standard Galaxy functions, Cistrome has 29 ChIP-chip- and ChIP-seq-specific tools in three major categories, from preliminary peak calling and correlation analyses to downstream genome feature association, gene expression analyses, and motif discovery. Cistrome is available at http://cistrome.org/ap/.
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