相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Integrating quantitative proteomics and metabolomics with a genome-scale metabolic network model
Keren Yizhak et al.
BIOINFORMATICS (2010)
Generation, analysis and functional annotation of expressed sequence tags from the sheepshead minnow (Cyprinodon variegatus)
Mehdi Pirooznia et al.
BMC GENOMICS (2010)
Integration of metabolomics and transcriptomics data to aid biomarker discovery in type 2 diabetes
Susan C. Connor et al.
MOLECULAR BIOSYSTEMS (2010)
Rapid behavior-based identification of neuroactive small molecules in the zebrafish
David Kokel et al.
NATURE CHEMICAL BIOLOGY (2010)
Zebrafish Behavioral Profiling Links Drugs to Biological Targets and Rest/Wake Regulation
Jason Rihel et al.
SCIENCE (2010)
Hepatic Transcriptomic and Metabolomic Responses in the Stickleback (Gasterosteus aculeatus) Exposed to Environmentally Relevant Concentrations of Dibenzanthracene
Tim D. Williams et al.
ENVIRONMENTAL SCIENCE & TECHNOLOGY (2009)
Regulation of CYP1A1 by heavy metals and consequences for drug metabolism
Anwar Anwar-Mohamed et al.
EXPERT OPINION ON DRUG METABOLISM & TOXICOLOGY (2009)
Systems biology approaches and pathway tools for investigating cardiovascular disease
Craig E. Wheelock et al.
MOLECULAR BIOSYSTEMS (2009)
Comparative systems biology of human and mouse as a tool to guide the modeling of human placental pathology
Brian Cox et al.
MOLECULAR SYSTEMS BIOLOGY (2009)
Applications of genome-scale metabolic reconstructions
Matthew A. Oberhardt et al.
MOLECULAR SYSTEMS BIOLOGY (2009)
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
Da Wei Huang et al.
NATURE PROTOCOLS (2009)
BRENDA, AMENDA and FRENDA the enzyme information system: new content and tools in 2009
Antje Chang et al.
NUCLEIC ACIDS RESEARCH (2009)
Malonyl-CoA decarboxylase inhibition is selectively cytotoxic to human breast cancer cells
W. Zhou et al.
ONCOGENE (2009)
Tyrosine Phosphorylation Inhibits PKM2 to Promote the Warburg Effect and Tumor Growth
Taro Hitosugi et al.
SCIENCE SIGNALING (2009)
Genome-scale metabolic networks
Marco Terzer et al.
WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE (2009)
Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production
Caroline Colijn et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Transcriptomic responses of European flounder (Platichthys flesus) to model toxicants
Tim D. Williams et al.
AQUATIC TOXICOLOGY (2008)
Gene-set approach for expression pattern analysis
Dougu Nam et al.
BRIEFINGS IN BIOINFORMATICS (2008)
The science behind dietary omega-3 fatty acids
Marc E. Surette
CANADIAN MEDICAL ASSOCIATION JOURNAL (2008)
Tumor cell metabolism: Cancer's Achilles' heel
Guido Kroemer et al.
CANCER CELL (2008)
Cancer cell metabolism: Warburg and beyond
Peggy P. Hsu et al.
CELL (2008)
Molecular and developmental effects of exposure to pyrene in the early life-stages of Cyprinodon variegatus
Laura A. Hendon et al.
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY (2008)
Contributions from metabolomics to fish research
Linda M. Samuelsson et al.
MOLECULAR BIOSYSTEMS (2008)
Changes in mitochondrial gene and protein expression in grass shrimp, Palaemonetes pugio, exposed to chronic hypoxia
Marius Brouwer et al.
MARINE ENVIRONMENTAL RESEARCH (2008)
Network-based prediction of human tissue-specific metabolism
Tomer Shlomi et al.
NATURE BIOTECHNOLOGY (2008)
New surveyor tools for charting microbial metabolic maps
Rainer Breitling et al.
NATURE REVIEWS MICROBIOLOGY (2008)
Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy
Philipp J. Keller et al.
SCIENCE (2008)
Context-specific metabolic networks are consistent with experiments
Scott A. Becker et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Differences in long-term outcome and prognostic factors according to viral status in patients with hepatocellular carcinoma treated by surgery
Kazuhiro Kondo et al.
JOURNAL OF GASTROINTESTINAL SURGERY (2008)
Imaging in systems biology
Sean G. Megason et al.
CELL (2007)
Currency and commodity metabolites: their identification and relation to the modularity of metabolic networks
M. Huss et al.
IET SYSTEMS BIOLOGY (2007)
The Edinburgh human metabolic network reconstruction and its functional analysis
Hongwu Ma et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Ultrasound biomicroscopy permits in vivo characterization of zebrafish liver tumors
Wolfram Goessling et al.
NATURE METHODS (2007)
A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information
Adam M. Feist et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Animal models of human disease: zebrafish swim into view
Graham J. Lieschke et al.
NATURE REVIEWS GENETICS (2007)
Fish 'n' chips: the use of microarrays for aquatic toxicology
Nancy D. Denslow et al.
MOLECULAR BIOSYSTEMS (2007)
Global reconstruction of the human metabolic network based on genomic and bibliomic data
Natalie C. Duarte et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Heavy metal accumulation and metallothionein concentration in the frog Rana ridibunda after exposure to chromium or a mixture of chromium and cadmium
N. S. Loumbourdis et al.
ENVIRONMENTAL POLLUTION (2007)
DNA microarray technology in toxicogenomics of aquatic models: Methods and applications
Zhenlin Ju et al.
COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY C-TOXICOLOGY & PHARMACOLOGY (2007)
Modeling human muscle disease in zebrafish
Jeffrey R. Guyon et al.
BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2007)
Transcriptional profiling reveals barcode-like toxicogenomic responses in the zebrafish embryo
Lixin Yang et al.
GENOME BIOLOGY (2007)
Ensembl 2007
T. J. P. Hubbard et al.
NUCLEIC ACIDS RESEARCH (2007)
From Mendelian to molecular genetics:: the Xiphophorus melanoma model
Svenja Meierjohann et al.
TRENDS IN GENETICS (2006)
Pathway analysis of kidney cancer using proteomics and metabolic profiling
Bertrand Perroud et al.
MOLECULAR CANCER (2006)
High-throughput zebrafish histology
Nicole A. Sabaliauskas et al.
METHODS (2006)
Modularity and community structure in networks
M. E. J. Newman
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
HepPar1, MOC-31, pCEA, mCEA and CD10 for distinguishing hepatocellular carcinoma vs. metastatic adenocarcinoma in liver fine needle aspirates
Luoquan Wang et al.
ACTA CYTOLOGICA (2006)
Acute cadmium intoxication induces alpha-class glutathione S-transferase protein synthesis and enzyme activity in rat liver
E Casalino et al.
TOXICOLOGY (2006)
Conservation of gene expression signatures between zebrafish and human liver tumors and tumor progression
SH Lam et al.
NATURE BIOTECHNOLOGY (2006)
The Zebrafish Information Network: the zebrafish model organism database
Judy Sprague et al.
NUCLEIC ACIDS RESEARCH (2006)
From genomics to chemical genomics: new developments in KEGG
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2006)
In silico genome-scale reconstruction and validation of the Staphylococcus aureus metabolic network
M Heinemann et al.
BIOTECHNOLOGY AND BIOENGINEERING (2005)
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
A Subramanian et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Systems toxicology: applications of toxicogenomics, transcriptomics, proteomics and metabolomics in toxicology
Wilbert H. M. Heijne et al.
EXPERT REVIEW OF PROTEOMICS (2005)
From signatures to models: understanding cancer using microarrays
E Segal et al.
NATURE GENETICS (2005)
Genome-scale reconstruction of the metabolic network in Staphylococcus aureus N315: an initial draft to the two-dimensional annotation
SA Becker et al.
BMC MICROBIOLOGY (2005)
In vivo drug discovery in the zebrafish
LI Zon et al.
NATURE REVIEWS DRUG DISCOVERY (2005)
Ecotoxicogenomics: the challenge of integrating genomics into aquatic and terrestrial ecotoxicology
JR Snape et al.
AQUATIC TOXICOLOGY (2004)
ROS stress in cancer cells and therapeutic implications
H Pelicano et al.
DRUG RESISTANCE UPDATES (2004)
VisANT: an online visualization and analysis tool for biological interaction data
ZJ Hu et al.
BMC BIOINFORMATICS (2004)
Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates
K Vandepoele et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Network biology:: Understanding the cell's functional organization
AL Barabási et al.
NATURE REVIEWS GENETICS (2004)
Finding and evaluating community structure in networks
MEJ Newman et al.
PHYSICAL REVIEW E (2004)
Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph
HW Ma et al.
BIOINFORMATICS (2004)
Response of rainbow trout transcriptome to model chemical contaminants
H Koskinen et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2004)
Toxicogenomics and systems toxicology: Aims and prospects
MD Waters et al.
NATURE REVIEWS GENETICS (2004)
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
O Jaillon et al.
NATURE (2004)
Integrating high-throughput and computational data elucidates bacterial networks
MW Covert et al.
NATURE (2004)
Evidence for a tumoral immune resistance mechanism based on tryptophan degradation by indoleamine 2,3-dioxygenase
C Uyttenhove et al.
NATURE MEDICINE (2003)
ExPASy: the proteomics server for in-depth protein knowledge and analysis
E Gasteiger et al.
NUCLEIC ACIDS RESEARCH (2003)
Activation of metallothioneins and α-crystallin/sHSPs in human lens epithelial cells by specific metals and the metal content of aging clear human lenses
JR Hawse et al.
INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE (2003)
Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network
J Förster et al.
GENOME RESEARCH (2003)
Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms
HW Ma et al.
BIOINFORMATICS (2003)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
Genome-scale metabolic model of Helicobacter pylori 26695
CH Schilling et al.
JOURNAL OF BACTERIOLOGY (2002)
Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae
S Schuster et al.
BIOINFORMATICS (2002)
The small world inside large metabolic networks
A Wagner et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2001)
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
T Ideker et al.
SCIENCE (2001)
Significance analysis of microarrays applied to the ionizing radiation response
VG Tusher et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
The Zebrafish Information Network (ZFIN): a resource for genetic, genomic and developmental research
J Sprague et al.
NUCLEIC ACIDS RESEARCH (2001)
The large-scale organization of metabolic networks
H Jeong et al.
NATURE (2000)
分享论文
