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Wei Ding et al.
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BMC GENOMICS (2018)
PanWeb: A web interface for pan-genomic analysis
Yan Pantoja et al.
PLOS ONE (2017)
The pangenome of an agronomically important crop plant Brassica oleracea
Agnieszka A. Golicz et al.
NATURE COMMUNICATIONS (2016)
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Xinpeng Tian et al.
FRONTIERS IN MICROBIOLOGY (2016)
Roary: rapid large-scale prokaryote pan genome analysis
Andrew J. Page et al.
BIOINFORMATICS (2015)
Ten years of pan-genome analyses
George Vernikos et al.
CURRENT OPINION IN MICROBIOLOGY (2015)
A Brief Review of Software Tools for Pangenomics
Jingfa Xiao et al.
GENOMICS PROTEOMICS & BIOINFORMATICS (2015)
PanGP: A tool for quickly analyzing bacterial pan-genome profile
Yongbing Zhao et al.
BIOINFORMATICS (2014)
ITEP: An integrated toolkit for exploration of microbial pan-genomes
Matthew N. Benedict et al.
BMC GENOMICS (2014)
De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits
Ying-hui Li et al.
NATURE BIOTECHNOLOGY (2014)
GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis
Bruno Contreras-Moreira et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
PANNOTATOR: an automated tool for annotation of pan-genomes
A. R. Santos et al.
GENETICS AND MOLECULAR RESEARCH (2013)
Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains comprising five genospecies
Masayuki Sugawara et al.
GENOME BIOLOGY (2013)
PGAP: pan-genomes analysis pipeline
Yongbing Zhao et al.
BIOINFORMATICS (2012)
Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments
Barbara Dunn et al.
GENOME RESEARCH (2012)
PGAT: a multistrain analysis resource for microbial genomes
M. J. Brittnacher et al.
BIOINFORMATICS (2011)
Comparative genomic analysis of Streptococcus suis reveals significant genomic diversity among different serotypes
Anding Zhang et al.
BMC GENOMICS (2011)
Whole-genome sequencing of multiple Arabidopsis thaliana populations
Jun Cao et al.
NATURE GENETICS (2011)
Comparative Genomics Study of Multi-Drug-Resistance Mechanisms in the Antibiotic-Resistant Streptococcus suis R61 Strain
Pan Hu et al.
PLOS ONE (2011)
PanCGHweb: a web tool for genotype calling in pangenome CGH data
Jumamurat R. Bayjanov et al.
BIOINFORMATICS (2010)
Parallelization of the MAFFT multiple sequence alignment program
Kazutaka Katoh et al.
BIOINFORMATICS (2010)
Legionella pneumophila pangenome reveals strain-specific virulence factors
Giuseppe D'Auria et al.
BMC GENOMICS (2010)
InParanoid 7: new algorithms and tools for eukaryotic orthology analysis
Gabriel Ostlund et al.
NUCLEIC ACIDS RESEARCH (2010)
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
Aaron E. Darling et al.
PLOS ONE (2010)
Structure and dynamics of the pan-genome of Streptococcus pneumoniae and closely related species
Claudio Donati et al.
GENOME BIOLOGY (2010)
Genome-based approaches to develop vaccines against bacterial pathogens
Davide Serruto et al.
VACCINE (2009)
The pangenome structure of Escherichia coli:: Comparative genomic analysis of E-coli commensal and pathogenic isolates
David A. Rasko et al.
JOURNAL OF BACTERIOLOGY (2008)
Graph clustering via a discrete uncoupling process
Stijn Van Dongen
SIAM JOURNAL ON MATRIX ANALYSIS AND APPLICATIONS (2008)
Genomic analysis of Bartonella identifies type IV secretion systems as host adaptability factors
Henri L. Saenz et al.
NATURE GENETICS (2007)
A Glimpse of Streptococcal Toxic Shock Syndrome from Comparative Genomics of S-suis 2 Chinese Isolates
Chen Chen et al.
PLOS ONE (2007)
Evolution of the core and pan-genome of Strepococcus: positive selection, recombination, and genome composition
Tristan Lefebure et al.
GENOME BIOLOGY (2007)
Automatic clustering of orthologs and inparalogs shared by multiple proteomes
Andrey Alexeyenko et al.
BIOINFORMATICS (2006)
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae:: Implications for the microbial pan-genome
H Tettelin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Identification of a universal group B Streptococcus vaccine by multiple genome screen
D Maione et al.
SCIENCE (2005)
An efficient algorithm for large-scale detection of protein families
AJ Enright et al.
NUCLEIC ACIDS RESEARCH (2002)
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
M Remm et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
The COG database: a tool for genome-scale analysis of protein functions and evolution
RL Tatusov et al.
NUCLEIC ACIDS RESEARCH (2000)