4.8 Article

Passive and active DNA methylation and the interplay with genetic variation in gene regulation

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

Genome-wide Methylation Profiles Reveal Quantitative Views of Human Aging Rates

Gregory Hannum et al.

MOLECULAR CELL (2013)

Article Biotechnology & Applied Microbiology

Genetic analysis of DNA methylation and gene expression levels in whole blood of healthy human subjects

Kristel R. van Eijk et al.

BMC GENOMICS (2012)

Article Biochemistry & Molecular Biology

Plasticity of DNA methylation in mouse T cell activation and differentiation

Yan Li et al.

BMC MOLECULAR BIOLOGY (2012)

Article Multidisciplinary Sciences

An integrated encyclopedia of DNA elements in the human genome

Ian Dunham et al.

NATURE (2012)

Article Multidisciplinary Sciences

The accessible chromatin landscape of the human genome

Robert E. Thurman et al.

NATURE (2012)

Article Multidisciplinary Sciences

An integrated map of genetic variation from 1,092 human genomes

David M. Altshuler et al.

NATURE (2012)

Article Multidisciplinary Sciences

Architecture of the human regulatory network derived from ENCODE data

Mark B. Gerstein et al.

NATURE (2012)

Review Genetics & Heredity

Functions of DNA methylation: islands, start sites, gene bodies and beyond

Peter A. Jones

NATURE REVIEWS GENETICS (2012)

Editorial Material Multidisciplinary Sciences

Epigenetic Islands in a Genetic Ocean

Dirk Schuebeler

SCIENCE (2012)

Article Multidisciplinary Sciences

DNA-binding factors shape the mouse methylome at distal regulatory regions

Michael B. Stadler et al.

NATURE (2011)

Article Multidisciplinary Sciences

Mapping and analysis of chromatin state dynamics in nine human cell types

Jason Ernst et al.

NATURE (2011)

Article Genetics & Heredity

Identification of genetic elements that autonomously determine DNA methylation states

Florian Lienert et al.

NATURE GENETICS (2011)

Review Medicine, Research & Experimental

Mediators and dynamics of DNA methylation

Robert Shoemaker et al.

WILEY INTERDISCIPLINARY REVIEWS-SYSTEMS BIOLOGY AND MEDICINE (2011)

Article Biotechnology & Applied Microbiology

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

Jordana T. Bell et al.

GENOME BIOLOGY (2011)

Article Genetics & Heredity

Genetic Control of Individual Differences in Gene-Specific Methylation in Human Brain

Dandan Zhang et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2010)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Article Computer Science, Interdisciplinary Applications

Learning Bayesian Networks with the bnlearn R Package

Marco Scutari

JOURNAL OF STATISTICAL SOFTWARE (2010)

Article Multidisciplinary Sciences

Transcriptome genetics using second generation sequencing in a Caucasian population

Stephen B. Montgomery et al.

NATURE (2010)

Article Multidisciplinary Sciences

Understanding mechanisms underlying human gene expression variation with RNA sequencing

Joseph K. Pickrell et al.

NATURE (2010)

Article Multidisciplinary Sciences

Integrating common and rare genetic variation in diverse human populations

David M. Altshuler et al.

NATURE (2010)

Article Multidisciplinary Sciences

Conserved role of intragenic DNA methylation in regulating alternative promoters

Alika K. Maunakea et al.

NATURE (2010)

Article Biotechnology & Applied Microbiology

Discovery and characterization of chromatin states for systematic annotation of the human genome

Jason Ernst et al.

NATURE BIOTECHNOLOGY (2010)

Article Biochemistry & Molecular Biology

ENCODE whole-genome data in the UCSC Genome Browser

Kate R. Rosenbloom et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Genetics & Heredity

Disentangling molecular relationships with a causal inference test

Joshua Millstein et al.

BMC GENETICS (2009)

Article Biochemistry & Molecular Biology

Lineage-specific DNA methylation in T cells correlates with histone methylation and enhancer activity

Christian Schmidl et al.

GENOME RESEARCH (2009)

Article Multidisciplinary Sciences

Human DNA methylomes at base resolution show widespread epigenomic differences

Ryan Lister et al.

NATURE (2009)

Article Genetics & Heredity

DNA methylation profiles in monozygotic and dizygotic twins

Zachary A. Kaminsky et al.

NATURE GENETICS (2009)

Article Multidisciplinary Sciences

Common Regulatory Variation Impacts Gene Expression in a Cell Type-Dependent Manner

Antigone S. Dimas et al.

SCIENCE (2009)

Article Biochemistry & Molecular Biology

High-resolution mapping and characterization of open chromatin across the genome

Alan P. Boyle et al.

Article Multidisciplinary Sciences

Genome-scale DNA methylation maps of pluripotent and differentiated cells

Alexander Meissner et al.

NATURE (2008)

Article Genetics & Heredity

An Sp1/Sp3 Binding Polymorphism Confers Methylation Protection

Yanis A. Boumber et al.

PLOS GENETICS (2008)

Article Genetics & Heredity

Population genomics of human gene expression

Barbara E. Stranger et al.

NATURE GENETICS (2007)

Article Genetics & Heredity

PLINK: A tool set for whole-genome association and population-based linkage analyses

Shaun Purcell et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2007)

Article Multidisciplinary Sciences

Gene body-specific methylation on the active X chromosome

Asaf Hellman et al.

SCIENCE (2007)

Article Biochemistry & Molecular Biology

High-throughput DNA methylation profiling using universal bead arrays

M Bibikova et al.

GENOME RESEARCH (2006)

Article Biotechnology & Applied Microbiology

GENCODE: producing a reference annotation for ENCODE

Jennifer Harrow et al.

GENOME BIOLOGY (2006)

Review Genetics & Heredity

DNA methylation and human disease

KD Robertson

NATURE REVIEWS GENETICS (2005)

Article Biochemistry & Molecular Biology

The UCSC Table Browser data retrieval tool

D Karolchik et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Multidisciplinary Sciences

Statistical significance for genomewide studies

JD Storey et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Review Cell Biology

DNA methylation patterns and epigenetic memory

A Bird

GENES & DEVELOPMENT (2002)

Review Multidisciplinary Sciences

Initial sequencing and analysis of the human genome

ES Lander et al.

NATURE (2001)