相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Using Signature Genes as Tools To Assess Environmental Viral Ecology and Diversity
Evelien M. Adriaenssens et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)
SDT: A Virus Classification Tool Based on Pairwise Sequence Alignment and Identity Calculation
Brejnev Muhizi Muhire et al.
PLOS ONE (2014)
A theoretical analysis of how strain-specific viruses can control microbial species diversity
T. Frede Thingstad et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Strong Seasonality and Interannual Recurrence in Marine Myovirus Communities
A. Pagarete et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Diversity and temporal dynamics of Southern California coastal marine cyanophage isolates
Jessica L. Clasen et al.
AQUATIC MICROBIAL ECOLOGY (2013)
Marine cyanophages exhibit local and regional biogeography
Marcia F. Marston et al.
ENVIRONMENTAL MICROBIOLOGY (2013)
Complex seasonality observed amongst diverse phytoplankton viruses in the Bay of Quinte, an embayment of Lake Ontario
R. M. Rozon et al.
FRESHWATER BIOLOGY (2013)
Short-term observations of marine bacterial and viral communities: patterns, connections and resilience
David M. Needham et al.
ISME JOURNAL (2013)
Abundant SAR11 viruses in the ocean
Yanlin Zhao et al.
NATURE (2013)
The Pacific Ocean Virome (POV): A Marine Viral Metagenomic Dataset and Associated Protein Clusters for Quantitative Viral Ecology
Bonnie L. Hurwitz et al.
PLOS ONE (2013)
The global virome: not as big as we thought?
J. Cesar Ignacio-Espinoza et al.
CURRENT OPINION IN VIROLOGY (2013)
Marine Viruses: Truth or Dare
Mya Breitbart
ANNUAL REVIEW OF MARINE SCIENCE, VOL 4 (2012)
Evaluation of Two Approaches for Assessing the Genetic Similarity of Virioplankton Populations as Defined by Genome Size
Sanchita Jamindar et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
Dynamic Viral Populations in Hypersaline Systems as Revealed by Metagenomic Assembly
Joanne B. Emerson et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
Highly improved homopolymer aware nucleotide-protein alignments with 454 data
Fredrik Lysholm
BMC BIOINFORMATICS (2012)
PhiSiGns: an online tool to identify signature genes in phages and design PCR primers for examining phage diversity
Bhakti Dwivedi et al.
BMC BIOINFORMATICS (2012)
Viruses in a deep oligotrophic sea: Seasonal distribution of marine viruses in the epi-, meso- and bathypelagic waters of the Eastern Mediterranean Sea
Iordanis Magiopoulos et al.
DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS (2012)
Seasonality and monthly dynamics of marine myovirus communities
Cheryl-Emiliane T. Chow et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Ocean time-series reveals recurring seasonal patterns of virioplankton dynamics in the northwestern Sargasso Sea
Rachel J. Parsons et al.
ISME JOURNAL (2012)
Groundtruthing Next-Gen Sequencing for Microbial Ecology-Biases and Errors in Community Structure Estimates from PCR Amplicon Pyrosequencing
Charles K. Lee et al.
PLOS ONE (2012)
Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification
David Berry et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Development of phoH as a Novel Signature Gene for Assessing Marine Phage Diversity
Dawn B. Goldsmith et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses
Kyoung-Ho Kim et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
phangorn: phylogenetic analysis in R
Klaus Peter Schliep
BIOINFORMATICS (2011)
The diversity of cyanomyovirus populations along a North-South Atlantic Ocean transect
Eleanor Jameson et al.
ISME JOURNAL (2011)
Marine viruses and global climate change
Roberto Danovaro et al.
FEMS MICROBIOLOGY REVIEWS (2011)
Picante: R tools for integrating phylogenies and ecology
Steven W. Kembel et al.
BIOINFORMATICS (2010)
Ubiquitous cyanobacterial podoviruses in the global oceans unveiled through viral DNA polymerase gene sequences
Sijun Huang et al.
ISME JOURNAL (2010)
Viral and microbial community dynamics in four aquatic environments
Beltran Rodriguez-Brito et al.
ISME JOURNAL (2010)
Marine Prasinovirus Genomes Show Low Evolutionary Divergence and Acquisition of Protein Metabolism Genes by Horizontal Gene Transfer
Herve Moreau et al.
JOURNAL OF VIROLOGY (2010)
Multiple displacement amplification compromises quantitative analysis of metagenomes
Suzan Yilmaz et al.
NATURE METHODS (2010)
TranslatorX: multiple alignment of nucleotide sequences guided by amino acid translations
Federico Abascal et al.
NUCLEIC ACIDS RESEARCH (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Seasonal and depth-related dynamics of prokaryotes and viruses in surface and deep waters of the northwestern Mediterranean Sea
Christian Winter et al.
DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS (2009)
From small hosts come big viruses: the complete genome of a second Ostreococcus tauri virus, OtV-1
Karen D. Weynberg et al.
ENVIRONMENTAL MICROBIOLOGY (2009)
Quantitative PCR reveals transient and persistent algal viruses in Lake Ontario, Canada
Steven M. Short et al.
ENVIRONMENTAL MICROBIOLOGY (2009)
Diverse and dynamic populations of cyanobacterial podoviruses in the Chesapeake Bay unveiled through DNA polymerase gene sequences
Feng Chen et al.
ENVIRONMENTAL MICROBIOLOGY (2009)
Horizontal gene transfer of an entire metabolic pathway between a eukaryotic alga and its DNA virus
Adam Monier et al.
GENOME RESEARCH (2009)
OPINION Explaining microbial population genomics through phage predation
Francisco Rodriguez-Valera et al.
NATURE REVIEWS MICROBIOLOGY (2009)
Whole-community genome amplification (WCGA) leads to compositional bias in methane-oxidizing communities as assessed by pmoA-based microarray analyses and QPCR
Paul L. E. Bodelier et al.
ENVIRONMENTAL MICROBIOLOGY REPORTS (2009)
Randomly amplified polymorphic DNA PCR as a tool for assessment of marine viral richness
Danielle M. Winget et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Phylogenetic diversity of sequences of cyanophage photosynthetic gene psbA in marine and freshwaters
C. Chenard et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Physical and biological correlates of virus dynamics in the southern Beaufort Sea and Amundsen Gulf
Jerome P. Payet et al.
JOURNAL OF MARINE SYSTEMS (2008)
Dissolution point and isolation robustness: Robustness criteria for general cluster analysis methods
Christian Hennig
JOURNAL OF MULTIVARIATE ANALYSIS (2008)
Ma-LMM01 infecting toxic Microcystis aeruginosa illuminates diverse cyanophage genome strategies
Takashi Yoshida et al.
JOURNAL OF BACTERIOLOGY (2008)
Cluster-wise assessment of cluster stability
Christian Hennig
COMPUTATIONAL STATISTICS & DATA ANALYSIS (2007)
New genera of RNA viruses in subtropical seawater, inferred from polymerase gene sequences
Alexander I. Culley et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Power law rank-abundance models for marine phage communities
Karl Heinz Hoffmann et al.
FEMS MICROBIOLOGY LETTERS (2007)
Genomic and structural analysis of Syn9, a cyanophage infecting marine Prochlorococcus and Synechococcus
Peter R. Weigele et al.
ENVIRONMENTAL MICROBIOLOGY (2007)
Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing
Robert Pinard et al.
BMC GENOMICS (2006)
Seasonal variations in virus-host populations in Norwegian coastal waters:: Focusing on the cyanophage community infecting marine Synechococcus spp.
Ruth-Anne Sandaa et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
Here a virus, there a virus, everywhere the same virus?
M Breitbart et al.
TRENDS IN MICROBIOLOGY (2005)
Three Prochlorococcus cyanophage genomes:: Signature features and ecological interpretations
MB Sullivan et al.
PLOS BIOLOGY (2005)
Genetic diversity of marine Synechococcus and co-occurring cyanophage communities:: evidence for viral control of phytoplankton
M Mühling et al.
ENVIRONMENTAL MICROBIOLOGY (2005)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Genetic diversity and population dynamics of cyanophage communities in the Chesapeake Bay
K Wang et al.
AQUATIC MICROBIAL ECOLOGY (2004)
APE: Analyses of Phylogenetics and Evolution in R language
E Paradis et al.
BIOINFORMATICS (2004)
Transfer of photosynthesis genes to and from Prochlorococcus viruses
D Lindell et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Complete genome sequence of the broad-host-range vibriophage KVP40: Comparative genomics of a T4-related bacteriophage
ES Miller et al.
JOURNAL OF BACTERIOLOGY (2003)
Genetic diversity and temporal variation in the cyanophage community infecting marine Synechococcus species in Rhode Island's coastal waters
MF Marston et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)
The Phage Proteomic Tree: a genome-based taxonomy for phage
F Rohwer et al.
JOURNAL OF BACTERIOLOGY (2002)
Comprehensive human genome amplification using multiple displacement amplification
FB Dean et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Stability of bacterial and viral community compositions in Danish coastal waters as depicted by DNA fingerprinting techniques
L Riemann et al.
AQUATIC MICROBIAL ECOLOGY (2002)
Prokaryotic and viral diversity patterns in marine plankton
JA Fuhrman et al.
ECOLOGICAL RESEARCH (2002)
Genome size distributions indicate variability and similarities among marine viral assemblages from diverse environments
GF Steward et al.
LIMNOLOGY AND OCEANOGRAPHY (2000)
The complete genomic sequence of the marine phage Roseophage SIO1 shares homology with nonmarine phages
F Rohwer et al.
LIMNOLOGY AND OCEANOGRAPHY (2000)