相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Dnmt1-Independent CG Methylation Contributes to Nucleosome Positioning in Diverse Eukaryotes
Jason T. Huff et al.
CELL (2014)
Transgenerational Epigenetic Inheritance: Myths and Mechanisms
Edith Heard et al.
CELL (2014)
Meristem-specific expression of epigenetic regulators safeguards transposon silencing in Arabidopsis
Tuncay Baubec et al.
EMBO REPORTS (2014)
Epigenetic differences between shoots and roots in Arabidopsis reveals tissue-specific regulation
Nicolas Widman et al.
EPIGENETICS (2014)
Deep Investigation of Arabidopsis thaliana Junk DNA Reveals a Continuum between Repetitive Elements and Genomic Dark Matter
Florian Maumus et al.
PLOS ONE (2014)
Ancestral repeats have shaped epigenome and genome composition for millions of years in Arabidopsis thaliana
Florian Maumus et al.
NATURE COMMUNICATIONS (2014)
The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin
Assaf Zemach et al.
CELL (2013)
The maize methylome influences mRNA splice sites and reveals widespread paramutation-like switches guided by small RNA
Michael Regulski et al.
GENOME RESEARCH (2013)
Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population
Robert J. Schmitz et al.
GENOME RESEARCH (2013)
Patterns of population epigenomic diversity
Robert J. Schmitz et al.
NATURE (2013)
The Capsella rubella genome and the genomic consequences of rapid mating system evolution
Tanja Slotte et al.
NATURE GENETICS (2013)
How important are transposons for plant evolution?
Damon Lisch
NATURE REVIEWS GENETICS (2013)
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato
Daniel Koenig et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Gene body methylation is conserved between plant orthologs and is of evolutionary consequence
Shohei Takuno et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression
Xin Li et al.
BMC GENOMICS (2012)
Reprogramming of DNA Methylation in Pollen Guides Epigenetic Inheritance via Small RNA
Joseph P. Calarco et al.
CELL (2012)
Body-Methylated Genes in Arabidopsis thaliana Are Functionally Important and Evolve Slowly
Shohei Takuno et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
Widespread dynamic DNA methylation in response to biotic stress
Robert H. Dowen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Deposition of Histone Variant H2A.Z within Gene Bodies Regulates Responsive Genes
Devin Coleman-Derr et al.
PLOS GENETICS (2012)
Nuclear DNA amounts in angiosperms: targets, trends and tomorrow
M. D. Bennett et al.
ANNALS OF BOTANY (2011)
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
Felix Krueger et al.
BIOINFORMATICS (2011)
Sperm Methylation Profiles Reveal Features of Epigenetic Inheritance and Evolution in Primates
Antoine Molaro et al.
CELL (2011)
Spontaneous epigenetic variation in the Arabidopsis thaliana methylome
Claude Becker et al.
NATURE (2011)
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
Tina T. Hu et al.
NATURE GENETICS (2011)
Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants
Robert J. Schmitz et al.
SCIENCE (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Relationship between nucleosome positioning and DNA methylation
Ramakrishna K. Chodavarapu et al.
NATURE (2010)
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
Julie A. Law et al.
NATURE REVIEWS GENETICS (2010)
Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana
Mark A. Beilstein et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Conservation and divergence of methylation patterning in plants and animals
Suhua Feng et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Genome-Wide Evolutionary Analysis of Eukaryotic DNA Methylation
Assaf Zemach et al.
SCIENCE (2010)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen
R. Keith Slotkin et al.
CELL (2009)
Circos: An information aesthetic for comparative genomics
Martin Krzywinski et al.
GENOME RESEARCH (2009)
The Dynamic Ups and Downs of Genome Size Evolution in Brassicaceae
Martin A. Lysak et al.
MOLECULAR BIOLOGY AND EVOLUTION (2009)
A transposon-induced epigenetic change leads to sex determination in melon
Antoine Martin et al.
NATURE (2009)
Human DNA methylomes at base resolution show widespread epigenomic differences
Ryan Lister et al.
NATURE (2009)
A metastable DWARF1 epigenetic mutant affecting plant stature in rice
Kotaro Miura et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
Ryan Lister et al.
CELL (2008)
Sequencing of natural strains of Arabidopsis thaliana with short reads
Stephan Ossowski et al.
GENOME RESEARCH (2008)
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
Shawn J. Cokus et al.
NATURE (2008)
DNA methylation landscapes: provocative insights from epigenomics
Miho M. Suzuki et al.
NATURE REVIEWS GENETICS (2008)
The Arabidopsis Information Resource (TAIR): gene structure and function annotation
David Swarbreck et al.
NUCLEIC ACIDS RESEARCH (2008)
Heritable epigenetic mutation of a transposon-flanked Arabidopsis gene due to lack of the chromatin-remodeling factor DDM1
Hidetoshi Saze et al.
EMBO JOURNAL (2007)
Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
Daniel Zilberman et al.
NATURE GENETICS (2007)
Transposable elements and the epigenetic regulation of the genome
R. Keith Slotkin et al.
NATURE REVIEWS GENETICS (2007)
Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis
Xiaoyu Zhang et al.
CELL (2006)
A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening
Kenneth Manning et al.
NATURE GENETICS (2006)
Mechanisms of chromosome number reduction in Arabidopsis thaliana and related Brassicaceae species
MA Lysak et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Comparative genome analyses of Arabidopsis spp.:: Inferring chromosomal rearrangement events in the evolutionary history of A-thaliana
K Yogeeswaran et al.
GENOME RESEARCH (2005)
Evolution of genome size in Brassicaceae
JS Johnston et al.
ANNALS OF BOTANY (2005)
RNA silencing genes control de novo DNA methylation
SWL Chan et al.
SCIENCE (2004)
cis-Acting determinants of heterochromatin formation on Drosophila melanogaster chromosome four
FL Sun et al.
MOLECULAR AND CELLULAR BIOLOGY (2004)
siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis
J Liu et al.
GENES & DEVELOPMENT (2004)
Statistical significance for genomewide studies
JD Storey et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Comparisons with Caenorhabditis (∼100 Mb) and Drosophila (∼175 Mb) using flow cytometry show genome size in Arabidopsis to be ∼157 Mb and thus ∼25 % larger than the Arabidopsis genome initiative estimate of ∼125 Mb
MD Bennett et al.
ANNALS OF BOTANY (2003)
Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes
XF Cao et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
M Remm et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation
AM Lindroth et al.
SCIENCE (2001)
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
S Kaul et al.
NATURE (2000)
SINE retroposons can be used in vivo as nucleation centers for de novo methylation
P Arnaud et al.
MOLECULAR AND CELLULAR BIOLOGY (2000)