4.6 Article

Multi-tissue Analysis of Co-expression Networks by Higher-Order Generalized Singular Value Decomposition Identifies Functionally Coherent Transcriptional Modules

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Medicine, General & Internal

Mechanisms of Disease Proteotoxicity and Cardiac Dysfunction - Alzheimer's Disease of the Heart?

Monte S. Willis et al.

NEW ENGLAND JOURNAL OF MEDICINE (2013)

Article Biotechnology & Applied Microbiology

CTen: a web-based platform for identifying enriched cell types from heterogeneous microarray data

Jason E. Shoemaker et al.

BMC GENOMICS (2012)

Article Biochemistry & Molecular Biology

Extension of cortical synaptic development distinguishes humans from chimpanzees and macaques

Xiling Liu et al.

GENOME RESEARCH (2012)

Article Cardiac & Cardiovascular Systems

Association of Stat3 with HSF1 plays a critical role in G-CSF-induced cardio-protection against ischemia/reperfusion injury

Hong Ma et al.

JOURNAL OF MOLECULAR AND CELLULAR CARDIOLOGY (2012)

Article Multidisciplinary Sciences

Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal

Simone A. Fietz et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemical Research Methods

Chapter 5: Network Biology Approach to Complex Diseases

Dong-Yeon Cho et al.

PLOS COMPUTATIONAL BIOLOGY (2012)

Article Biochemical Research Methods

A multiple network learning approach to capture system-wide condition-specific responses

Sushmita Roy et al.

BIOINFORMATICS (2011)

Review Genetics & Heredity

Network medicine: a network-based approach to human disease

Albert-Laszlo Barabasi et al.

NATURE REVIEWS GENETICS (2011)

Article Biochemical Research Methods

Integrative Analysis of Many Weighted Co-Expression Networks Using Tensor Computation

Wenyuan Li et al.

PLOS COMPUTATIONAL BIOLOGY (2011)

Article Biochemical Research Methods

Cross-species common regulatory network inference without requirement for prior gene affiliation

Amin Moghaddas Gholami et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules

Bruno M. Tesson et al.

BMC BIOINFORMATICS (2010)

Review Biochemistry & Molecular Biology

Nonresolving Inflammation

Carl Nathan et al.

Article Multidisciplinary Sciences

A trans-acting locus regulates an anti-viral expression network and type 1 diabetes risk

Matthias Heinig et al.

NATURE (2010)

Article Biochemical Research Methods

PASTAA: identifying transcription factors associated with sets of co-regulated genes

Helge G. Roider et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

Da Wei Huang et al.

NATURE PROTOCOLS (2009)

Article Biotechnology & Applied Microbiology

OPINION A network view of disease and compound screening

Eric E. Schadt et al.

NATURE REVIEWS DRUG DISCOVERY (2009)

Article Biochemical Research Methods

fdrtool: a versatile R package for estimating local and tail area-based false discovery rates

Korbinian Strimmer

BIOINFORMATICS (2008)

Article Biochemical Research Methods

minet: A R/Bioconductor Package for Inferring Large Transcriptional Networks Using Mutual Information

Patrick E. Meyer et al.

BMC BIOINFORMATICS (2008)

Article Biochemical Research Methods

WGCNA: an R package for weighted correlation network analysis

Peter Langfelder et al.

BMC BIOINFORMATICS (2008)

Article Mathematics, Applied

Multidimensional partitioning and bi-partitioning: analysis and application to gene expression data sets

Gabriela Kalna et al.

INTERNATIONAL JOURNAL OF COMPUTER MATHEMATICS (2008)

Article Multidisciplinary Sciences

Variations in DNA elucidate molecular networks that cause disease

Yanqing Chen et al.

NATURE (2008)

Article Genetics & Heredity

Identification of renal Cd36 as a determinant of blood pressure and risk for hypertension

Michal Pravenec et al.

NATURE GENETICS (2008)

Article Computer Science, Artificial Intelligence

Spectral clustering with eigenvector selection

Tao Xiang et al.

PATTERN RECOGNITION (2008)

Article Biochemistry & Molecular Biology

Mapping the genetic architecture of gene expression in human liver

Eric E. Schadt et al.

PLOS BIOLOGY (2008)

Article Biochemistry & Molecular Biology

Network-based classification of breast cancer metastasis

Han-Yu Chuang et al.

MOLECULAR SYSTEMS BIOLOGY (2007)

Article Mathematics, Applied

Spectral clustering and its use in bioinformatics

Desmond J. Higham et al.

JOURNAL OF COMPUTATIONAL AND APPLIED MATHEMATICS (2007)

Article Cardiac & Cardiovascular Systems

Transcriptional genomics associates FOX transcription factors with human heart failure

Sridhar Hannenhalli et al.

CIRCULATION (2006)

Article Genetics & Heredity

Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes

Lude Franke et al.

AMERICAN JOURNAL OF HUMAN GENETICS (2006)

Review Multidisciplinary Sciences

Complex networks and simple models in biology

E de Silva et al.

JOURNAL OF THE ROYAL SOCIETY INTERFACE (2005)

Article Biochemistry & Molecular Biology

WebGestalt: an integrated system for exploring gene sets in various biological contexts

B Zhang et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Multidisciplinary Sciences

IRF-7 is the master regulator of type-I interferon-dependent immune responses

K Honda et al.

NATURE (2005)

Article Biochemistry & Molecular Biology

A general framework for weighted gene co-expression network analysis

Bin Zhang et al.

STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY (2005)

Article Biochemistry & Molecular Biology

A shrinkage approach to large-scale covariance matrix estimation and implications for functional genomics

J Schafer et al.

STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Unique gene expression signatures of independently-derived human embryonic stem cell lines

MJ Abeyta et al.

HUMAN MOLECULAR GENETICS (2004)

Article Mathematical & Computational Biology

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

RA Irizarry et al.

BIOSTATISTICS (2003)

Article Multidisciplinary Sciences

Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms

O Alter et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Multidisciplinary Sciences

Multiclass cancer diagnosis using tumor gene expression signatures

S Ramaswamy et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)