4.6 Article

Genomic Mechanisms Accounting for the Adaptation to Parasitism in Nematode-Trapping Fungi

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biotechnology & Applied Microbiology

Proteome of the Nematode-Trapping Cells of the Fungus Monacrosporium haptotylum

Karl-Magnus Andersson et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)

Article Biochemical Research Methods

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

Helga Thorvaldsdottir et al.

BRIEFINGS IN BIOINFORMATICS (2013)

Article Biochemistry & Molecular Biology

Estimating Gene Gain and Loss Rates in the Presence of Error in Genome Assembly and Annotation Using CAFE 3

Mira V. Han et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Multidisciplinary Sciences

Origin and evolution of carnivorism in the Ascomycota (fungi)

Ence Yang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Multidisciplinary Sciences

Genomic perspectives on the evolution of fungal entomopathogenicity in Beauveria bassiana

Guohua Xiao et al.

SCIENTIFIC REPORTS (2012)

Article Microbiology

Indifferent, Affectionate, or Deceitful: Lifestyles and Secretomes of Fungi

Rohan G. T. Lowe et al.

PLOS PATHOGENS (2012)

Review Genetics & Heredity

Sex in Fungi

Min Ni et al.

ANNUAL REVIEW OF GENETICS, VOL 45 (2011)

Review Plant Sciences

How filamentous pathogens co-opt plants: the ins and outs of fungal effectors

Ronnie de Jonge et al.

CURRENT OPINION IN PLANT BIOLOGY (2011)

Review Genetics & Heredity

The evolutionary origin of orphan genes

Diethard Tautz et al.

NATURE REVIEWS GENETICS (2011)

Article Microbiology

Melanogenesis in dermatophyte species in vitro and during infection

Sirida Youngchim et al.

MICROBIOLOGY-SGM (2011)

Article Biochemistry & Molecular Biology

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

Sebastien Duplessis et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biotechnology & Applied Microbiology

Comparative and functional genomics provide insights into the pathogenicity of dermatophytic fungi

Anke Burmester et al.

GENOME BIOLOGY (2011)

Article Biochemical Research Methods

Fast and accurate long-read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Search and clustering orders of magnitude faster than BLAST

Robert C. Edgar

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

The Pfam protein families database

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Multidisciplinary Sciences

Pathogenicity Determinants in Smut Fungi Revealed by Genome Comparison

Jan Schirawski et al.

SCIENCE (2010)

Article Biotechnology & Applied Microbiology

Differential expression analysis for sequence count data

Simon Anders et al.

GENOME BIOLOGY (2010)

Article Mycology

Fungi evolved right on track

Robert Lucking et al.

MYCOLOGIA (2009)

Article Plant Sciences

PALAEOANELLUS DIMORPHUS GEN. ET SP NOV (DEUTEROMYCOTINA): A CRETACEOUS PREDATORY FUNGUS

Alexander R. Schmidt et al.

AMERICAN JOURNAL OF BOTANY (2008)

Article Biochemical Research Methods

RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences

James K. Hane et al.

BMC BIOINFORMATICS (2008)

Article Biotechnology & Applied Microbiology

Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)

Diego Martinez et al.

NATURE BIOTECHNOLOGY (2008)

Article Biochemical Research Methods

Construction, visualisation, and clustering of transcription networks from Microarray expression data

Tom C. Freeman et al.

PLOS COMPUTATIONAL BIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Comparison of the characteristics of fungal and plant tyrosinases

Emilia Selinheimo et al.

JOURNAL OF BIOTECHNOLOGY (2007)

Article Multidisciplinary Sciences

Evolution of nematode-trapping cells of predatory fungi of the Orbiliaceae based on evidence from rRNA-encoding DNA and multiprotein sequences

Ying Yang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biotechnology & Applied Microbiology

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

Herman J. Pel et al.

NATURE BIOTECHNOLOGY (2007)

Article Multidisciplinary Sciences

Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis

Joerg Kaemper et al.

NATURE (2006)

Article Mycology

A five-gene phylogeny of Pezizomycotina

Joseph W. Spatafora et al.

MYCOLOGIA (2006)

Article Multidisciplinary Sciences

Reconstructing the early evolution of Fungi using a six-gene phylogeny

Timothy Y. James et al.

NATURE (2006)

Article Biochemistry & Molecular Biology

PHI-base: a new database for pathogen host interactions

Rainer Winnenburg et al.

NUCLEIC ACIDS RESEARCH (2006)

Review Dermatology

Hydrolytic enzymes as virulence factors of Candida albicans

M Schaller et al.

MYCOSES (2005)

Article Biochemical Research Methods

De novo identification of repeat families in large genomes

AL Price et al.

BIOINFORMATICS (2005)

Article Multidisciplinary Sciences

The genome sequence of the rice blast fungus Magnaporthe grisea

RA Dean et al.

NATURE (2005)

Article Biochemistry & Molecular Biology

Gene identification in novel eukaryotic genomes by self-training algorithm

A Lomsadze et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Improved prediction of signal peptides: SignalP 3.0

JD Bendtsen et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Article Biochemistry & Molecular Biology

ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences

D Laslett et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemical Research Methods

The COG database: an updated version includes eukaryotes

RL Tatusov et al.

BMC BIOINFORMATICS (2003)

Article Biochemistry & Molecular Biology

OrthoMCL: Identification of ortholog groups for eukaryotic genomes

L Li et al.

GENOME RESEARCH (2003)

Review Ecology

Evolution by gene duplication: an update

JZ Zhang

TRENDS IN ECOLOGY & EVOLUTION (2003)

Article Biochemistry & Molecular Biology

Molecular evidence that the extracellular cutinase Pbc1 is required for pathogenicity of Pyrenopeziza brassicae on oilseed rape

DH Li et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2003)

Article Multidisciplinary Sciences

The genome sequence of the filamentous fungus Neurospora crassa

JE Galagan et al.

NATURE (2003)

Review Cell Biology

The contribution of melanin to microbial pathogenesis

JD Nosanchuk et al.

CELLULAR MICROBIOLOGY (2003)

Review Microbiology

Genomics of parasitic and symbiotic fungi

A Tunlid et al.

CURRENT OPINION IN MICROBIOLOGY (2002)

Article Biochemistry & Molecular Biology

The role of lineage-specific gene family expansion in the evolution of eukaryotes

O Lespinet et al.

GENOME RESEARCH (2002)

Article Biotechnology & Applied Microbiology

Improving the pathogenicity of a nematode-trapping fungus by genetic engineering of a subtilisin with nematotoxic activity

J Åhman et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)

Article Plant Sciences

Colonization of plant roots by egg-parasitic and nematode-trapping fungi

JJ Bordallo et al.

NEW PHYTOLOGIST (2002)

Article Biotechnology & Applied Microbiology

Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays

S Brenner et al.

NATURE BIOTECHNOLOGY (2000)