相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Massive comparative genomic analysis reveals convergent evolution of specialized bacteria
Vicky Merhej et al.
BIOLOGY DIRECT (2009)
rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea
Zarraz May-Ping Lee et al.
NUCLEIC ACIDS RESEARCH (2009)
The genomic basis of trophic strategy in marine bacteria
Federico M. Lauro et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Metabolic-network-driven analysis of bacterial ecological strategies
Shiri Freilich et al.
GENOME BIOLOGY (2009)
Swelfe: a detector of internal repeats in sequences and structures
Anne-Laure Abraham et al.
BIOINFORMATICS (2008)
Differential replication dynamics for large and small Vibrio chromosomes affect gene dosage, expression and location
Rikard Dryselius et al.
BMC GENOMICS (2008)
Comparative genomics: the bacterial pan-genome
Herve Tettelin et al.
CURRENT OPINION IN MICROBIOLOGY (2008)
Nearly neutrality and the evolution of codon usage bias in eukaryotic genomes
Sankar Subramanian
GENETICS (2008)
Coevolution of Codon Usage and tRNA Genes Leads to Alternative Stable States of Biased Codon Usage
Paul G. Higgs et al.
MOLECULAR BIOLOGY AND EVOLUTION (2008)
Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome
Daniel G. Gibson et al.
SCIENCE (2008)
A coarse-grained biophysical model of E. coli and its application to perturbation of the rRNA operon copy number
Arbel D. Tadmor et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Phylogenetic identity, growth-response time and rRNA operon copy number of soil bacteria indicate different stages of community succession
Pravin Malla Shrestha et al.
ENVIRONMENTAL MICROBIOLOGY (2007)
Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
Ken Kurokawa et al.
DNA RESEARCH (2007)
Reconstructing the ancestor of Mycobacterium leprae:: The dynamics of gene loss and genome reduction
Laura Gomez-Valero et al.
GENOME RESEARCH (2007)
DoriC: a database of oriC regions in bacterial genomes
Feng Gao et al.
BIOINFORMATICS (2007)
Performance of the translational apparatus varies with the ecological strategies of bacteria
Les Dethlefsen et al.
JOURNAL OF BACTERIOLOGY (2007)
Causes of insertion sequences abundance in prokaryotic genomes
Marie Touchon et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Persister cells, dormancy and infectious disease
Kim Lewis
NATURE REVIEWS MICROBIOLOGY (2007)
Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity
Steffen Mueller et al.
JOURNAL OF VIROLOGY (2006)
Genomic GC level, optimal growth temperature, and genome size in prokaryotes
Hector Musto et al.
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2006)
Metagenomic analysis of the human distal gut microbiome
Steven R. Gill et al.
SCIENCE (2006)
Replication-associated gene dosage effects shape the genomes of fast-growing bacteria but only for transcription and translation genes
E Couturier et al.
MOLECULAR MICROBIOLOGY (2006)
Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host
H Toh et al.
GENOME RESEARCH (2006)
Coping with cold:: The genome of the versatile marine Antarctica bacterium Pseudoalteromonas haloplanktis TAC125
C Médigue et al.
GENOME RESEARCH (2005)
Obesity alters gut microbial ecology
RE Ley et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Diversity of the human intestinal microbial flora
PB Eckburg et al.
SCIENCE (2005)
The genomic pattern of tDNA operon expression in E-coli
DH Ardell et al.
PLOS COMPUTATIONAL BIOLOGY (2005)
Comparative metagenomics of microbial communities
SG Tringe et al.
SCIENCE (2005)
Variation in the strength of selected codon usage bias among bacteria
PM Sharp et al.
NUCLEIC ACIDS RESEARCH (2005)
Characterization of Ferroplasma isolates and Ferroplasma acidarmanus sp nov., extreme acidophiles from acid mine drainage and industrial bioleaching environments
M Dopson et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)
Community structure and metabolism through reconstruction of microbial genomes from the environment
GW Tyson et al.
NATURE (2004)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
Some like it cold: biocatalysis at low temperatures
D Georlette et al.
FEMS MICROBIOLOGY REVIEWS (2004)
Multiple origins of replication in archaea
LM Kelman et al.
TRENDS IN MICROBIOLOGY (2004)
Codon bias and heterologous protein expression
C Gustafsson et al.
TRENDS IN BIOTECHNOLOGY (2004)
Life history implications of rRNA gene copy number in Escherichia coli
BS Stevenson et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)
Codon usage bias from tRNA's point of view: Redundancy, specialization, and efficient decoding for translation optimization
EPC Rocha
GENOME RESEARCH (2004)
Comparative genomic structure of prokaryotes
SD Bentley et al.
ANNUAL REVIEW OF GENETICS (2004)
Genome-scale analysis of the uses of the Escherichia coli genome:: Model-driven analysis of heterogeneous data sets
TE Allen et al.
JOURNAL OF BACTERIOLOGY (2003)
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
S Guindon et al.
SYSTEMATIC BIOLOGY (2003)
Predicting gene expression levels from codon biases in α-proteobacterial genomes
S Karlin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Microbial communities in acid mine drainage
BJ Baker et al.
FEMS MICROBIOLOGY ECOLOGY (2003)
Hierarchy of sequence-dependent features associated with prokaryotic translation
G Lithwick et al.
GENOME RESEARCH (2003)
Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth
RU Ibarra et al.
NATURE (2002)
Correlations between Shine-Dalgarno sequences and gene features such as predicted expression levels and operon structures
J Ma et al.
JOURNAL OF BACTERIOLOGY (2002)
Analysis of comparative data using generalized estimating equations
E Paradis et al.
JOURNAL OF THEORETICAL BIOLOGY (2002)
Chemical synthesis of poliovirus cDNA: Generation of infectious virus in the absence of natural template
J Cello et al.
SCIENCE (2002)
Accounting for background nucleotide composition when measuring codon usage bias
JA Novembre
MOLECULAR BIOLOGY AND EVOLUTION (2002)
Prokaryotic diversity -: Magnitude, dynamics, and controlling factors
V Torsvik et al.
SCIENCE (2002)
rRNA promoter activity in the fast-growing bacterium Vibrio natriegens
SE Aiyar et al.
JOURNAL OF BACTERIOLOGY (2002)
Molecular relationship between two groups of the genus Leptospirillum and the finding that Leptosphillum ferriphilum sp nov dominates South African commercial biooxidation tanks that operate at 40°C
NJ Coram et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)
Deletional bias and the evolution of bacterial genomes
A Mira et al.
TRENDS IN GENETICS (2001)
Massive gene decay in the leprosy bacillus
ST Cole et al.
NATURE (2001)
The process of genome shrinkage in the obligate symbiont Buchnera aphidicola
Nancy A. Moran et al.
GENOME BIOLOGY (2001)
Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage
O Béjà et al.
ENVIRONMENTAL MICROBIOLOGY (2000)
Co-evolution of the tuf genes links gene conversion with the generation of chromosomal inversions
D Hughes
JOURNAL OF MOLECULAR BIOLOGY (2000)
RRNA operon copy number reflects ecological strategies of bacteria
JA Klappenbach et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)
Predicted highly expressed genes of diverse prokaryotic genomes
S Karlin et al.
JOURNAL OF BACTERIOLOGY (2000)
分享论文
