相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。IslandViewer: an integrated interface for computational identification and visualization of genomic islands
Morgan G. I. Langille et al.
BIOINFORMATICS (2009)
Horizontal gene transfer of zinc and non-zinc forms of bacterial ribosomal protein S4
Ke Chen et al.
BMC EVOLUTIONARY BIOLOGY (2009)
GtRNAdb: a database of transfer RNA genes detected in genomic sequence
Patricia P. Chan et al.
NUCLEIC ACIDS RESEARCH (2009)
Clustering of Codons with Rare Cognate tRNAs in Human Genes Suggests an Extra Level of Expression Regulation
Joanna L. Parmley et al.
PLOS GENETICS (2009)
General Rules for Optimal Codon Choice
Ruth Hershberg et al.
PLOS GENETICS (2009)
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama et al.
BMC GENOMICS (2008)
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
John C. Marioni et al.
GENOME RESEARCH (2008)
Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world
Eugene V. Koonin et al.
NUCLEIC ACIDS RESEARCH (2008)
Complete genome sequence of the complex carbohydrate-degrading marine bacterium, Saccharophagus degradans strain 2-40T
Ronald M. Weiner et al.
PLOS GENETICS (2008)
Universal patterns of purifying selection at noncoding positions in bacteria
Nacho Molina et al.
GENOME RESEARCH (2008)
Different packing of external residues can explain differences in the thermostability of proteins from thermophilic and mesophilic organisms
Anna V. Glyakina et al.
BIOINFORMATICS (2007)
Widespread positive selection in synonymous sites of mammalian genes
Alissa M. Resch et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
tRNA's wobble decoding of the genome: 40 years of modification
Paul F. Agris et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
Synonymous codon usage in Escherichia coli:: Selection for translational accuracy
Nina Stoletzki et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Error minimization explains the codon usage of highly expressed genes in Escherichia coli
Hamed Shateri Najafabadi et al.
GENE (2007)
A silent polymorphism in the MDR1 gene changes substrate specificity
Chava Kimchi-Sarfaty et al.
SCIENCE (2007)
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
Peng Lu et al.
NATURE BIOTECHNOLOGY (2007)
Environment specific substitution tables for thermophilic proteins
K. Mizuguchi et al.
BMC BIOINFORMATICS (2007)
TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes
Jeremy D. Selengut et al.
NUCLEIC ACIDS RESEARCH (2007)
Protein and DNA sequence determinants of thermophilic adaptation
Konstantin B. Zeldovich et al.
PLOS COMPUTATIONAL BIOLOGY (2007)
Computational prediction of genomic functional cores specific to different microbes
Alessandra Carbone
JOURNAL OF MOLECULAR EVOLUTION (2006)
Ammonium toxicity and potassium limitation in yeast
David C. Hess et al.
PLOS BIOLOGY (2006)
Psychrophilic microorganisms: challenges for life
S D'Amico et al.
EMBO REPORTS (2006)
Genomic comparisons among γ-proteobacteria
J Mrázek et al.
ENVIRONMENTAL MICROBIOLOGY (2006)
Codon usage bias and tRNA over-expression in Buchnera aphidicola after aromatic amino acid nutritional stress on its host Acyrthosiphon pisum
Hubert Charles et al.
NUCLEIC ACIDS RESEARCH (2006)
An introduction to ROC analysis
Tom Fawcett
PATTERN RECOGNITION LETTERS (2006)
A problem in multivariate analysis of codon usage data and a possible solution
H Suzuki et al.
FEBS LETTERS (2005)
Insights on the evolution of metabolic networks of unicellular translationally biased organisms from transcriptomic data and sequence analysis
A Carbone et al.
JOURNAL OF MOLECULAR EVOLUTION (2005)
Comparison of codon usage measures and their applicability in prediction of microbial gene expressivity
F Supek et al.
BMC BIOINFORMATICS (2005)
Predicted highly expressed genes in archaeal genomes
S Karlin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Genomic and proteomic comparisons between bacterial and archaeal genomes and related comparisons with the yeast and fly genomes
S Karlin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Codon bias signatures, organization of microorganisms in codon space, and lifestyle
A Carbone et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
Selective charging of tRNA isoacceptors induced by amino-acid starvation
KA Dittmar et al.
EMBO REPORTS (2005)
Differences in codon bias cannot explain differences in translational power among microbes
L Dethlefsen et al.
BMC BIOINFORMATICS (2005)
Microeconomic principles explain an optimal genome size in bacteria
JAG Ranea et al.
TRENDS IN GENETICS (2005)
Variation in the strength of selected codon usage bias among bacteria
PM Sharp et al.
NUCLEIC ACIDS RESEARCH (2005)
Codon usage between genomes is constrained by genome-wide mutational processes
SL Chen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
INCA: synonymous codon usage analysis and clustering by means of self-organizing map
F Supek et al.
BIOINFORMATICS (2004)
Evolutionary forces in shaping the codon and amino acid usages in Blochmannia floridanus
T Banerjee et al.
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2004)
The Baumgartner-Weiß-Schindler test for the detection of differentially expressed genes in replicated microarray experiments
M Neuhäuser et al.
BIOINFORMATICS (2004)
Mutational and selective pressures on codon and amino acid usage in Buchnera, endosymbiotic bacteria of aphids
C Rispe et al.
GENOME RESEARCH (2004)
Codon usage bias from tRNA's point of view: Redundancy, specialization, and efficient decoding for translation optimization
EPC Rocha
GENOME RESEARCH (2004)
Solving the riddle of codon usage preferences: a test for translational selection
M dos Reis et al.
NUCLEIC ACIDS RESEARCH (2004)
Decoding the genome: a modified view
PF Agris
NUCLEIC ACIDS RESEARCH (2004)
The replication-related organization of bacterial genomes
EPC Rocha
MICROBIOLOGY-SGM (2004)
The COG database: an updated version includes eukaryotes
RL Tatusov et al.
BMC BIOINFORMATICS (2003)
Inference for the generalization error
C Nadeau et al.
MACHINE LEARNING (2003)
Gene expression level influences amino acid usage, but not codon usage, in the tsetse fly endosymbiont Wigglesworthia
JT Herbeck et al.
MICROBIOLOGY-SGM (2003)
When contemporary aminoacyl-tRNA synthetases invent their cognate amino acid metabolism
H Roy et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
G+C3 structuring along the genome:: A common feature in prokaryotes
V Daubin et al.
MOLECULAR BIOLOGY AND EVOLUTION (2003)
Use and misuse of correspondence analysis in codon usage studies
G Perrière et al.
NUCLEIC ACIDS RESEARCH (2002)
Synonymous codon usage in Pseudomonas aeruginosa PA01
RJ Grocock et al.
GENE (2002)
Alkyl hydroperoxide reductase is the primary scavenger of endogenous hydrogen peroxide in Escherichia coli
LC Seaver et al.
JOURNAL OF BACTERIOLOGY (2001)
Codon usage and tRNA genes in eukaryotes: Correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis
S Kanaya et al.
JOURNAL OF MOLECULAR EVOLUTION (2001)
Inferring lifestyle from gene expression patterns
A Wagner
MOLECULAR BIOLOGY AND EVOLUTION (2000)
Absence of translationally selected synonymous codon usage bias in Helicobacter pylori
B Lafay et al.
MICROBIOLOGY-UK (2000)
Predicted highly expressed genes of diverse prokaryotic genomes
S Karlin et al.
JOURNAL OF BACTERIOLOGY (2000)
分享论文
