4.6 Article

Patterns of Positive Selection in Six Mammalian Genomes

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

Distinct genomic signatures of adaptation in pre- and postnatal environments during human evolution

Monica Uddin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Genetics & Heredity

Dynamic evolution of the innate immune system in Drosophila

Timothy B. Sackton et al.

NATURE GENETICS (2007)

Article Multidisciplinary Sciences

p53 regulates maternal reproduction through LIF

Wenwei Hu et al.

NATURE (2007)

Article Multidisciplinary Sciences

Evolution of genes and genomes on the Drosophila phylogeny

Andrew G. Clark et al.

NATURE (2007)

Review Biochemistry & Molecular Biology

Population genomics:: Whole-genome analysis of polymorphism and divergence in Drosophila simulans

David J. Begun et al.

PLOS BIOLOGY (2007)

Review Genetics & Heredity

Recent and ongoing selection in the human genome

Rasmus Nielsen et al.

NATURE REVIEWS GENETICS (2007)

Article Genetics & Heredity

Diet and the evolution of human amylase gene copy number variation

George H. Perry et al.

NATURE GENETICS (2007)

Article Multidisciplinary Sciences

Structure of acid-sensing ion channel 1 at 1.9A resolution and low pH

Jayasankar Jasti et al.

NATURE (2007)

Article Biochemistry & Molecular Biology

Population genetics without intraspecific data

Jeffrey L. Thorne et al.

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Multidisciplinary Sciences

Specificity in protein interactions and its relationship with sequence diversity and coevolution

Luke Hakes et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Multidisciplinary Sciences

More genes underwent positive selection in chimpanzee evolution than in human evolution

Margaret A. Bakewell et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemistry & Molecular Biology

Multiple hypothesis testing to detect lineages under positive selection that affects only a few sites

Maria Anisimova et al.

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Biochemistry & Molecular Biology

Rate of evolution in brain-expressed genes in humans and other primates

Hurng-Yi Wang et al.

PLOS BIOLOGY (2007)

Article Cell Biology

The evolution and genomic landscape of CGB1 and CGB2 genes

Pille Hallast et al.

MOLECULAR AND CELLULAR ENDOCRINOLOGY (2007)

Article Biochemistry & Molecular Biology

Pervasive adaptive evolution among interactors of the Drosophila hybrid inviability gene, Nup96

Daven C. Presgraves et al.

MOLECULAR BIOLOGY AND EVOLUTION (2007)

Article Biotechnology & Applied Microbiology

Exon arrays provide accurate assessments of gene expression

Karen Kapur et al.

GENOME BIOLOGY (2007)

Article Genetics & Heredity

Localizing recent adaptive evolution in the human genome

Scott H. Williamson et al.

PLOS GENETICS (2007)

Review Genetics & Heredity

Did brain-specific genes evolve faster in humans than in chimpanzees?

Peng Shi et al.

TRENDS IN GENETICS (2006)

Article Genetics & Heredity

Forces shaping the fastest evolving regions in the human genome

Katherine S. Pollard et al.

PLOS GENETICS (2006)

Review Biology

Positive selection in the evolution of cancer

Bernard J. Crespi et al.

BIOLOGICAL REVIEWS (2006)

Article Biochemical Research Methods

The UCSC Known Genes

F Hsu et al.

BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Lineage-specific expansions and contractions of the bitter taste receptor gene repertoire in vertebrates

Y Go

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Correction Biochemistry & Molecular Biology

A map of recent positive selection in the human genome (vol 4, pg 154, 2006)

BF Voight et al.

PLOS BIOLOGY (2006)

Article Biochemical Research Methods

Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome

Leonardo Arbiza et al.

PLOS COMPUTATIONAL BIOLOGY (2006)

Article Biochemistry & Molecular Biology

A map of recent positive selection in the human genome

BF Voight et al.

PLOS BIOLOGY (2006)

Article Multidisciplinary Sciences

Global landscape of recent inferred Darwinian selection for Homo sapiens

ET Wang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Biochemistry & Molecular Biology

From genomics to chemical genomics: new developments in KEGG

Minoru Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2006)

Review Multidisciplinary Sciences

Genome sequence, comparative analysis and haplotype structure of the domestic dog

K Lindblad-Toh et al.

NATURE (2005)

Article Biochemistry & Molecular Biology

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

JZ Zhang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Article Biochemistry & Molecular Biology

Genomic regions exhibiting positive selection identified from dense genotype data

CS Carlson et al.

GENOME RESEARCH (2005)

Review Multidisciplinary Sciences

A haplotype map of the human genome

D Altshuler et al.

NATURE (2005)

Article Multidisciplinary Sciences

Natural selection on protein-coding genes in the human genome

CD Bustamante et al.

NATURE (2005)

Article Multidisciplinary Sciences

Why highly expressed proteins evolve slowly

DA Drummond et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Review Genetics & Heredity

How malaria has affected the human genome and what human genetics can teach us about malaria

DP Kwiatkowski

AMERICAN JOURNAL OF HUMAN GENETICS (2005)

Article Biochemistry & Molecular Biology

A scan for positively selected genes in the genomes of humans and chimpanzees

R Nielsen et al.

PLOS BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Bayes empirical Bayes inference of amino acid sites under positive selection

ZH Yang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2005)

Review Multidisciplinary Sciences

Initial sequence of the chimpanzee genome and comparison with the human genome

TS Mikkelsen et al.

NATURE (2005)

Review Genetics & Heredity

Molecular signatures of natural selection

R Nielsen

ANNUAL REVIEW OF GENETICS (2005)

Article Biochemistry & Molecular Biology

Evidence for widespread degradation of gene control regions in hominid genomes

PD Keightley et al.

PLOS BIOLOGY (2005)

Article Biochemistry & Molecular Biology

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

KD Pruitt et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

The Vertebrate Genome Annotation (Vega) database

JL Ashurst et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

Aligning multiple genomic sequences with the threaded blockset aligner

M Blanchette et al.

GENOME RESEARCH (2004)

Article Multidisciplinary Sciences

Modeling the site-specific variation of selection patterns along lineages

S Guindon et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Article Biochemistry & Molecular Biology

Accelerated evolution of nervous system genes in the origin of Homo sapiens

S Dorus et al.

Article Biochemistry & Molecular Biology

Neuromedin U is involved in nociceptive reflexes and adaptation to environmental stimuli in mice

K Nakahara et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2004)

Article Biochemistry & Molecular Biology

The gut-brain peptide neuromedin U is involved in the mammalian circadian oscillator system

K Nakahara et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2004)

Review Biochemistry & Molecular Biology

Positive selection on the human genome

EJ Vallender et al.

HUMAN MOLECULAR GENETICS (2004)

Article Multidisciplinary Sciences

Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios

AG Clark et al.

SCIENCE (2003)

Article Biochemistry & Molecular Biology

The receptors for mammalian sweet and umami taste

GQ Zhao et al.

Article Multidisciplinary Sciences

Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes

WJ Kent et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemistry & Molecular Biology

Estimating the distribution of selection coefficients from phylogenetic data with applications to mitochondrial and viral DNA

R Nielsen et al.

MOLECULAR BIOLOGY AND EVOLUTION (2003)

Review Genetics & Heredity

Human and mouse proteases:: A comparative genomic approach

XS Puente et al.

NATURE REVIEWS GENETICS (2003)

Review Immunology

The TIM gene family:: Emerging roles in immunity and disease

VK Kuchroo et al.

NATURE REVIEWS IMMUNOLOGY (2003)

Article Biochemistry & Molecular Biology

Summaries of affymetrix GeneChip probe level data

RA Irizarry et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Multidisciplinary Sciences

The maltase-glucoamylase gene: Common ancestry to sucrase-isomaltase with complementary starch digestion activities

BL Nichols et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Review Multidisciplinary Sciences

Initial sequencing and comparative analysis of the mouse genome

RH Waterston et al.

NATURE (2002)

Letter Genetics & Heredity

Orthology, paralogy and proposed classification for paralog subtypes

ELL Sonnhammer et al.

TRENDS IN GENETICS (2002)

Article Biochemistry & Molecular Biology

Mammalian sperm proteins are rapidly evolving: Evidence of positive selection in functionally diverse genes

DG Torgerson et al.

MOLECULAR BIOLOGY AND EVOLUTION (2002)

Article Biochemistry & Molecular Biology

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

ZH Yang et al.

MOLECULAR BIOLOGY AND EVOLUTION (2002)

Review Multidisciplinary Sciences

Initial sequencing and analysis of the human genome

ES Lander et al.

NATURE (2001)

Article Biochemistry & Molecular Biology

Determinants of substitution rates in mammalian genes: Expression pattern affects selection intensity but not mutation rate

L Duret et al.

MOLECULAR BIOLOGY AND EVOLUTION (2000)