相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Characterization of a Planctomycetal Organelle: a Novel Bacterial Microcompartment for the Aerobic Degradation of Plant Saccharides
Onur Erbilgin et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2014)
Compartmentalization and organelle formation in bacteria
Elias Cornejo et al.
CURRENT OPINION IN CELL BIOLOGY (2014)
Structure and Identification of a Pterin Dehydratase-like Protein as a Ribulose-bisphosphate Carboxylase/Oxygenase (RuBisCO) Assembly Factor in the α-Carboxysome
Nicole M. Wheatley et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2014)
Assembly of Robust Bacterial Microcompartment Shells Using Building Blocks from an Organelle of Unknown Function
Jonathan K. Lassila et al.
JOURNAL OF MOLECULAR BIOLOGY (2014)
The Candidate Phylum Poribacteria by Single-Cell Genomics: New Insights into Phylogeny, Cell-Compartmentation, Eukaryote-Like Repeat Proteins, and Other Genomic Features
Janine Kamke et al.
PLOS ONE (2014)
PhyloSift: phylogenetic analysis of genomes and metagenomes
Aaron E. Darling et al.
PEERJ (2014)
Biogenesis of a Bacterial Organelle: The Carboxysome Assembly Pathway
Jeffrey C. Cameron et al.
CELL (2013)
Evidence that a Metabolic Microcompartment Contains and Recycles Private Cofactor Pools
Douglas L. Huseby et al.
JOURNAL OF BACTERIOLOGY (2013)
The Structure of CcmP, a Tandem Bacterial Microcompartment Domain Protein from the β-Carboxysome, Forms a Subcompartment Within a Microcompartment
Fei Cai et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2013)
The Shells of BMC-Type Microcompartment Organelles in Bacteria
Todd O. Yeates et al.
JOURNAL OF MOLECULAR MICROBIOLOGY AND BIOTECHNOLOGY (2013)
Insights into the phylogeny and coding potential of microbial dark matter
Christian Rinke et al.
NATURE (2013)
Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species
Markus Sutter et al.
PHOTOSYNTHESIS RESEARCH (2013)
Involvement of a Bacterial Microcompartment in the Metabolism of Fucose and Rhamnose by Clostridium phytofermentans
Elsa Petit et al.
PLOS ONE (2013)
Bacterial microcompartment shells of diverse functional types possess pentameric vertex proteins
Nicole M. Wheatley et al.
PROTEIN SCIENCE (2013)
Using comparative genomics to uncover new kinds of protein-based metabolic organelles in bacteria
Julien Jorda et al.
PROTEIN SCIENCE (2013)
Isolation and Characterization of the Prochlorococcus Carboxysome Reveal the Presence of the Novel Shell Protein CsoS1D
Evan W. Roberts et al.
JOURNAL OF BACTERIOLOGY (2012)
Elucidating Essential Role of Conserved Carboxysomal Protein CcmN Reveals Common Feature of Bacterial Microcompartment Assembly
James N. Kinney et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2012)
New lives for old: evolution of pseudoenzyme function illustrated by iRhoms
Colin Adrain et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2012)
Anaerobic Ammonium-Oxidizing Bacteria: Unique Microorganisms with Exceptional Properties
Laura van Niftrik et al.
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS (2012)
IMG: the integrated microbial genomes database and comparative analysis system
Victor M. Markowitz et al.
NUCLEIC ACIDS RESEARCH (2012)
The Pfam protein families database
Marco Punta et al.
NUCLEIC ACIDS RESEARCH (2012)
Structural Determinants of the Outer Shell of β-Carboxysomes in Synechococcus elongatus PCC 7942: Roles for CcmK2, K3-K4, CcmO, and CcmL
Benjamin D. Rae et al.
PLOS ONE (2012)
The PduQ Enzyme Is an Alcohol Dehydrogenase Used to Recycle NAD+ Internally within the Pdu Microcompartment of Salmonella enterica
Shouqiang Cheng et al.
PLOS ONE (2012)
Structural Insight into the Clostridium difficile Ethanolamine Utilisation Microcompartment
Alison C. Pitts et al.
PLOS ONE (2012)
Microbial conversion of choline to trimethylamine requires a glycyl radical enzyme
Smaranda Craciun et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Genetic analysis around aminoalcohol dehydrogenase gene of Rhodococcus erythropolis MAK154: a putative GntR transcription factor in transcriptional regulation
Nobuyuki Urano et al.
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2011)
Cytoscape 2.8: new features for data integration and network visualization
Michael E. Smoot et al.
BIOINFORMATICS (2011)
clusterMaker: a multi-algorithm clustering plugin for Cytoscape
John H. Morris et al.
BMC BIOINFORMATICS (2011)
Inorganic carbon transporters of the cyanobacterial CO2 concentrating mechanism
G. Dean Price
PHOTOSYNTHESIS RESEARCH (2011)
Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy
Ivica Letunic et al.
NUCLEIC ACIDS RESEARCH (2011)
The Escherichia coli Protein YfeX Functions as a Porphyrinogen Oxidase, Not a Heme Dechelatase
Harry A. Dailey et al.
MBIO (2011)
Accelerated Profile HMM Searches
Sean R. Eddy
PLOS COMPUTATIONAL BIOLOGY (2011)
Bacterial Microcompartments
Cheryl A. Kerfeld et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 64, 2010 (2010)
Prokaryotic gene clusters: A rich toolbox for synthetic biology
Michael Fischbach et al.
BIOTECHNOLOGY JOURNAL (2010)
BLAST-EXPLORER helps you building datasets for phylogenetic analysis
Alexis Dereeper et al.
BMC EVOLUTIONARY BIOLOGY (2010)
Recent progress in stereoselective synthesis with aldolases
Pere Clapes et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2010)
Characterization of the PduS Cobalamin Reductase of Salmonella enterica and Its Role in the Pdu Microcompartment
Shouqiang Cheng et al.
JOURNAL OF BACTERIOLOGY (2010)
Structural Insight into the Mechanisms of Transport across the Salmonella enterica Pdu Microcompartment Shell
Christopher S. Crowley et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2010)
Synthesis of Empty Bacterial Microcompartments, Directed Organelle Protein Incorporation, and Evidence of Filament-Associated Organelle Movement
Joshua B. Parsons et al.
MOLECULAR CELL (2010)
Functional Cyanobacterial β-Carboxysomes Have an Absolute Requirement for Both Long and Short Forms of the CcmM Protein
Benedict M. Long et al.
PLANT PHYSIOLOGY (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
Characterisation of PduS, the pdu Metabolosome Corrin Reductase, and Evidence of Substructural Organisation within the Bacterial Microcompartment
Joshua B. Parsons et al.
PLOS ONE (2010)
Structural basis of the oxidative activation of the carboxysomal γ-carbonic anhydrase, CcmM
Kerry L. Pena et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Spatially Ordered Dynamics of the Bacterial Carbon Fixation Machinery
David F. Savage et al.
SCIENCE (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
Structure of a trimeric bacterial microcompartment shell protein, EtuB, associated with ethanol utilization in Clostridium kluyveri
Dana Heldt et al.
BIOCHEMICAL JOURNAL (2009)
Detecting gene clusters under evolutionary constraint in a large number of genomes
Xu Ling et al.
BIOINFORMATICS (2009)
Jalview Version 2-a multiple sequence alignment editor and analysis workbench
Andrew M. Waterhouse et al.
BIOINFORMATICS (2009)
Comparative Genomics of Ethanolamine Utilization
Olga Tsoy et al.
JOURNAL OF BACTERIOLOGY (2009)
Novel substrates of a ribose-5-phosphate isomerase from Clostridium thermocellum
Ran-Young Yoon et al.
JOURNAL OF BIOTECHNOLOGY (2009)
Identification and Structural Analysis of a Novel Carboxysome Shell Protein with Implications for Metabolite Transport
Michael G. Klein et al.
JOURNAL OF MOLECULAR BIOLOGY (2009)
The Pentameric Vertex Proteins Are Necessary for the Icosahedral Carboxysome Shell to Function as a CO2 Leakage Barrier
Fei Cai et al.
PLOS ONE (2009)
Multiple posttranscriptional regulatory mechanisms partner to control ethanolamine utilization in Enterococcus faecalis
Kristina A. Fox et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Exogenous or L-Rhamnose-Derived 1,2-Propanediol Is Metabolized via a pduD-Dependent Pathway in Listeria innocua
Junfeng Xue et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Bacterial microcompartments: their properties and paradoxes
Shouqiang Cheng et al.
BIOESSAYS (2008)
The Radical SAM Superfamily
Perry A. Frey et al.
CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY (2008)
Microcompartments for B12-dependent 1,2-propanediol degradation provide protection from DNA and cellular damage by a reactive metabolic intermediate
Edith M. Sampson et al.
JOURNAL OF BACTERIOLOGY (2008)
Biochemical and structural insights into bacterial organelle form and biogenesis
Joshua B. Parsons et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
CO2 fixation kinetics of Halothiobacillus neapolitanus mutant carboxysomes lacking carbonic anhydrase suggest the shell acts as a diffusional barrier for CO2
Zhicheng Dou et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2008)
Phylogeny.fr: robust phylogenetic analysis for the non-specialist
A. Dereeper et al.
NUCLEIC ACIDS RESEARCH (2008)
The genome of Clostridium kluyveri, a strict anaerobe with unique metabolic features
Henning Seedorf et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Atomic-level models of the bacterial carboxysome shell
Shiho Tanaka et al.
SCIENCE (2008)
A multiprotein bicarbonate dehydration complex essential to carboxysome function in cyanobacteria
Swan S. -W. Cot et al.
JOURNAL OF BACTERIOLOGY (2008)
Escherichia coli malic enzymes:: Two isoforms with substantial differences in kinetic properties, metabolic regulation, and structure
Federico P. Bologna et al.
JOURNAL OF BACTERIOLOGY (2007)
Complete nucleotide sequence of the freshwater unicellular cyanobacterium Synechococcus elongatus PCC 6301 chromosome:: gene content and organization
Chieko Sugita et al.
PHOTOSYNTHESIS RESEARCH (2007)
PduL is an evolutionarily distinct phosphotransacylase involved in B12-dependent 1,2-propanediol degradation by Salmonella enterica serovar typhimurium LT2
Yu Liu et al.
JOURNAL OF BACTERIOLOGY (2007)
A novel NADP+-dependent L-1-amino-2-propanol dehydrogenase from Rhodococcus erythropolis MAK154:: a promising enzyme for the production of double chiral aminoalcohols
M. Kataoka et al.
LETTERS IN APPLIED MICROBIOLOGY (2006)
Whole-genome transcription profiling reveals genes up-regulated by growth on fucose in the human gut bacterium Roseburia inulinivorans
Karen P. Scott et al.
JOURNAL OF BACTERIOLOGY (2006)
Conserving a volatile metabolite:: a role for carboxysome-like organelles in Salmonella enterica
JT Penrod et al.
JOURNAL OF BACTERIOLOGY (2006)
The structure of β-carbonic anhydrase from the carboxysomal shell reveals a distinct subclass with one active site for the price of two
MR Sawaya et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2006)
Identification of Listeria monocytogenes genes contributing to intracellular replication by expression profiling and mutant screening
B Joseph et al.
JOURNAL OF BACTERIOLOGY (2006)
Minimal functions and physiological conditions required for growth of Salmonella enterica on ethanolamine in the absence of the metabolosome
SR Brinsmade et al.
JOURNAL OF BACTERIOLOGY (2005)
Combining two genomes in one cell:: Stable cloning of the Synechocystis PCC6803 genome in the Bacillus subtilis 168 genome
M Itaya et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Protein structures forming the shell of primitive bacterial organelles
CA Kerfeld et al.
SCIENCE (2005)
MEDS and PocR are novel domains with a predicted role in sensing simple hydrocarbon derivatives in prokaryotic signal transduction systems
V Anantharaman et al.
BIOINFORMATICS (2005)
Biochemical evidence that the pduS gene encodes a bifunctional cobalamin reductase
EM Sampson et al.
MICROBIOLOGY-SGM (2005)
A novel method for accurate operon predictions in all sequenced prokaryotes
MN Price et al.
NUCLEIC ACIDS RESEARCH (2005)
The eutD gene of Salmonella enterica encodes a protein with phosphotransacetylase enzyme activity
SR Brinsmade et al.
JOURNAL OF BACTERIOLOGY (2004)
MUSCLE: multiple sequence alignment with high accuracy and high throughput
RC Edgar
NUCLEIC ACIDS RESEARCH (2004)
A novel evolutionary lineage of carbonic anhydrase (ε class) is a component of the carboxysome shell
AKC So et al.
JOURNAL OF BACTERIOLOGY (2004)
ARB:: a software environment for sequence data
W Ludwig et al.
NUCLEIC ACIDS RESEARCH (2004)
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
RC Edgar
BMC BIOINFORMATICS (2004)
Versatile and open software for comparing large genomes
S Kurtz et al.
GENOME BIOLOGY (2004)
Molecular characterization of the 1,3-propanediol (1,3-PD) operon of Clostridium butyricum
C Raynaud et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Comparison of the genome sequences of Listeria monocytogenes and Listeria innocua:: clues for evolution and pathogenicity
C Buchrieser et al.
FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY (2003)
CO2 concentrating mechanisms in cyanobacteria:: molecular components, their diversity and evolution
MR Badger et al.
JOURNAL OF EXPERIMENTAL BOTANY (2003)
PduP is a coenzyme-a-acylating propionaldehyde dehydrogenase associated with the polyhedral bodies involved in B-12-dependent 1,2-propanediol degradation by Salmonella enterica serovar Typhimurium LT2
NA Leal et al.
ARCHIVES OF MICROBIOLOGY (2003)
Connected gene neighborhoods in prokaryotic genomes
IB Rogozin et al.
NUCLEIC ACIDS RESEARCH (2002)
Functional genomic, biochemical, and genetic characterization of the Salmonella pduO gene, an ATP:cob(I)alamin adenosyltransferase gene
CLV Johnson et al.
JOURNAL OF BACTERIOLOGY (2001)
Structural and biochemical investigations of the catalytic mechanism of an NADP-dependent aldehyde dehydrogenase from Streptococcus mutans
D Cobessi et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
分享论文
