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Mattia C. F. Prosperi et al.
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Inferring viral quasispecies spectra from 454 pyrosequencing reads
Irina Astrovskaya et al.
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ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data
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BMC BIOINFORMATICS (2011)
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A framework for variation discovery and genotyping using next-generation DNA sequencing data
Mark A. DePristo et al.
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Rodrigo Goya et al.
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Optimization of allele-specific PCR using patient-specific HIV consensus sequences for primer design
Valerie F. Boltz et al.
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NUCLEIC ACIDS RESEARCH (2010)
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Charlotte Hedskog et al.
PLOS ONE (2010)
The Evolutionary Analysis of Emerging Low Frequency HIV-1 CXCR4 Using Variants through Time-An Ultra-Deep Approach
John Archer et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Slider-maximum use of probability information for alignment of short sequence reads and SNP detection
Nawar Malhis et al.
BIOINFORMATICS (2009)
SNP detection for massively parallel whole-genome resequencing
Ruiqiang Li et al.
GENOME RESEARCH (2009)
Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populations
Gabriella Rozera et al.
RETROVIROLOGY (2009)
Quality scores and SNP detection in sequencing-by-synthesis systems
William Brockman et al.
GENOME RESEARCH (2008)
Mapping short DNA sequencing reads and calling variants using mapping quality scores
Heng Li et al.
GENOME RESEARCH (2008)
Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing
Jesus F. Salazar-Gonzalez et al.
JOURNAL OF VIROLOGY (2008)
Accurate whole human genome sequencing using reversible terminator chemistry
David R. Bentley et al.
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Viral population estimation using pyrosequencing
Nicholas Eriksson et al.
PLOS COMPUTATIONAL BIOLOGY (2008)
Characterization of mutation spectra with ultra-deep pyrosequencing: Application to HIV-1 drug resistance
Chunlin Wang et al.
GENOME RESEARCH (2007)
DNA bar coding and pyrosequencing to identify rare HIV drug resistance mutations
Christian Hoffmann et al.
NUCLEIC ACIDS RESEARCH (2007)
Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis
S Palmer et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2005)
An SNP map of the human genome generated by reduced representation shotgun sequencing
D Altshuler et al.
NATURE (2000)