相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Estimation of alternative splicing isoform frequencies from RNA-Seq data
Marius Nicolae et al.
ALGORITHMS FOR MOLECULAR BIOLOGY (2011)
Sensitive gene fusion detection using ambiguously mapping RNA-Seq read pairs
Marcus Kinsella et al.
BIOINFORMATICS (2011)
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Bo Li et al.
BMC BIOINFORMATICS (2011)
Transcriptional consequences of genomic structural aberrations in breast cancer
Koichiro Inaki et al.
GENOME RESEARCH (2011)
A novel bioinformatics pipeline for identification and characterization of fusion transcripts in breast cancer and normal cell lines
Yan W. Asmann et al.
NUCLEIC ACIDS RESEARCH (2011)
Recurrent chimeric RNAs enriched in human prostate cancer identified by deep sequencing
Kalpana Kannan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data
Andrew McPherson et al.
PLOS COMPUTATIONAL BIOLOGY (2011)
Identification of fusion genes in breast cancer by paired-end RNA-sequencing
Henrik Edgren et al.
GENOME BIOLOGY (2011)
A probabilistic framework for aligning paired-end RNA-seq data
Yin Hu et al.
BIOINFORMATICS (2010)
MicroRNAs and Cellular Phenotypy
Kenneth S. Kosik
CELL (2010)
Integrative analysis of the melanoma transcriptome
Michael F. Berger et al.
GENOME RESEARCH (2010)
Optimization of de novo transcriptome assembly from next-generation sequencing data
Yann Surget-Groba et al.
GENOME RESEARCH (2010)
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2010)
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs
Mitchell Guttman et al.
NATURE BIOTECHNOLOGY (2010)
Androgen-induced TOP2B-mediated double-strand breaks and prostate cancer gene rearrangements
Michael C. Haffner et al.
NATURE GENETICS (2010)
Rearrangements of the RAF kinase pathway in prostate cancer, gastric cancer and melanoma
Nallasivam Palanisamy et al.
NATURE MEDICINE (2010)
De novo assembly and analysis of RNA-seq data
Gordon Robertson et al.
NATURE METHODS (2010)
Anaplastic Lymphoma Kinase Inhibition in Non-Small-Cell Lung Cancer
Eunice L. Kwak et al.
NEW ENGLAND JOURNAL OF MEDICINE (2010)
Detection of splice junctions from paired-end RNA-seq data by SpliceMap
Kin Fai Au et al.
NUCLEIC ACIDS RESEARCH (2010)
FusionSeq: a modular framework for finding gene fusions by analyzing paired-end RNA-sequencing data
Andrea Sboner et al.
GENOME BIOLOGY (2010)
Global and unbiased detection of splice junctions from RNA-seq data
Adam Ameur et al.
GENOME BIOLOGY (2010)
RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data
Nicole Cloonan et al.
BIOINFORMATICS (2009)
De novo transcriptome assembly with ABySS
Inanc Birol et al.
BIOINFORMATICS (2009)
TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell et al.
BIOINFORMATICS (2009)
Nuclear Receptor-Induced Chromosomal Proximity and DNA Breaks Underlie Specific Translocations in Cancer
Chunru Lin et al.
CELL (2009)
A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome
Oliver A. Hampton et al.
GENOME RESEARCH (2009)
Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding
Kevin Judd McKernan et al.
GENOME RESEARCH (2009)
Circos: An information aesthetic for comparative genomics
Martin Krzywinski et al.
GENOME RESEARCH (2009)
Transcriptome sequencing to detect gene fusions in cancer
Christopher A. Maher et al.
NATURE (2009)
mRNA-Seq whole-transcriptome analysis of a single cell
Fuchou Tang et al.
NATURE METHODS (2009)
RNA-Seq: a revolutionary tool for transcriptomics
Zhong Wang et al.
NATURE REVIEWS GENETICS (2009)
Recurrent fusion of MYB and NFIB transcription factor genes in carcinomas of the breast and head and neck
Marta Persson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Chimeric transcript discovery by paired-end transcriptome sequencing
Christopher A. Maher et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing
Moran Yassour et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Optimal spliced alignments of short sequence reads
Fabio De Bona et al.
BIOINFORMATICS (2008)
EML4-ALK fusion gene and efficacy of an ALK kinase inhibitor in lung cancer
Jussi P. Koivunen et al.
CLINICAL CANCER RESEARCH (2008)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
Alternative isoform regulation in human tissue transcriptomes
Eric T. Wang et al.
NATURE (2008)
Stem cell transcriptome profiling via massive-scale mRNA sequencing
Nicole Cloonan et al.
NATURE METHODS (2008)
Mapping and quantifying mammalian transcriptomes by RNA-Seq
Ali Mortazavi et al.
NATURE METHODS (2008)
The transcriptional landscape of the yeast genome defined by RNA sequencing
Ugrappa Nagalakshmi et al.
SCIENCE (2008)
Annotating genomes with massive-scale RNA sequencing
France Denoeud et al.
GENOME BIOLOGY (2008)
EML4-ALK fusion lung cancer:: A rare acquired event
Sven Perner et al.
NEOPLASIA (2008)
Recurrent gene fusions in prostate cancer
Chandan Kumar-Sinha et al.
NATURE REVIEWS CANCER (2008)
Five-year follow-up of patients receiving imatinib for chronic myeloid leukemia
Brian J. Druker et al.
NEW ENGLAND JOURNAL OF MEDICINE (2006)
The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
Leming Shi et al.
NATURE BIOTECHNOLOGY (2006)
Evaluation of DNA microarray results with quantitative gene expression platforms
Roger D. Canales et al.
NATURE BIOTECHNOLOGY (2006)
Expression of variant TMPRSS2/ERG fusion messenger RNAs is associated with aggressive prostate cancer
Jianghua Wang et al.
CANCER RESEARCH (2006)
Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer
SA Tomlins et al.
SCIENCE (2005)
ERBB2, TBX2, RPS6KB1, and MYC alternations in breast tissues of BRCA1 and BRCA2 mutation carriers
C Adem et al.
GENES CHROMOSOMES & CANCER (2004)
Imatinib compared with interferon and low-dose cytarabine for newly diagnosed chronic-phase chronic myeloid leukemia
SG O'Brien et al.
NEW ENGLAND JOURNAL OF MEDICINE (2003)
Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
BP Lewis et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Expression of the ETV6-NTRK3 gene fusion as a primary event in human secretory breast carcinoma
C Tognon et al.
CANCER CELL (2002)
Comprehensive copy number and gene expression profiling of the 17q23 amplicon in human breast cancer
O Monni et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)