相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Protein Nuclear Magnetic Resonance under Physiological Conditions
Gary J. Pielak et al.
BIOCHEMISTRY (2009)
Atomistic Modeling of Macromolecular Crowding Predicts Modest Increases in Protein Folding and Binding Stability
Sanbo Qin et al.
BIOPHYSICAL JOURNAL (2009)
The Native 3D Organization of Bacterial Polysomes
Florian Brandt et al.
CELL (2009)
Cytoplasmic Protein Mobility in Osmotically Stressed Escherichia coli
Michael C. Konopka et al.
JOURNAL OF BACTERIOLOGY (2009)
Coarse grained simulations of a small peptide: Effects of finite damping and hydrodynamic interactions
Uwe Winter et al.
JOURNAL OF CHEMICAL PHYSICS (2009)
An O(N2) approximation for hydrodynamic interactions in Brownian dynamics simulations
Tihamer Geyer et al.
JOURNAL OF CHEMICAL PHYSICS (2009)
Striking Effects of Hydrodynamic Interactions on the Simulated Diffusion and Folding of Proteins
Tamara Frembgen-Kesner et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2009)
Modulation of Calmodulin Plasticity by the Effect of Macromolecular Crowding
Dirar Homouz et al.
JOURNAL OF MOLECULAR BIOLOGY (2009)
On the Contributions of Diffusion and Thermal Activation to Electron Transfer between Phormidium laminosum Plastocyanin and Cytochrome f: Brownian Dynamics Simulations with Explicit Modeling of Nonpolar Desolvation Interactions and Electron Transfer Events
Razif R. Gabdoulline et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2009)
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
Bryson D. Bennett et al.
NATURE CHEMICAL BIOLOGY (2009)
EcoCyc: A comprehensive view of Escherichia coli biology
Ingrid M. Keseler et al.
NUCLEIC ACIDS RESEARCH (2009)
Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima
Ying Zhang et al.
SCIENCE (2009)
Single-molecule approach to molecular biology in living bacterial cells
X. Sunney Xie et al.
ANNUAL REVIEW OF BIOPHYSICS (2008)
Macromolecular crowding and confinement: Biochemical, biophysical, and potential physiological consequences
Huan-Xiang Zhou et al.
ANNUAL REVIEW OF BIOPHYSICS (2008)
Crowding effects on diffusion in solutions and cells
James A. Dix et al.
ANNUAL REVIEW OF BIOPHYSICS (2008)
Influence of Macromolecular Crowding on Protein-Protein Association Rates-a Brownian Dynamics Study
Grzegorz Wieczorek et al.
BIOPHYSICAL JOURNAL (2008)
Sampling the cell with anomalous diffusion - The discovery of slowness
Gernot Guigas et al.
BIOPHYSICAL JOURNAL (2008)
Coarse-grained molecular simulation of diffusion and reaction kinetics in a crowded virtual cytoplasm
Douglas Ridgway et al.
BIOPHYSICAL JOURNAL (2008)
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama et al.
BMC GENOMICS (2008)
Crowded, cell-like environment induces shape changes in aspherical protein
Dirar Homouz et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Protein exchange dynamics at chemoreceptor clusters in Escherichia coli
Sonja Schulmeister et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Effect of mixed macromolecular crowding agents on protein folding
Huan-Xiang Zhou
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
In vivo visualization of type II plasmid segregation: bacterial actin. laments pushing plasmids
Christopher S. Campbell et al.
JOURNAL OF CELL BIOLOGY (2007)
Docking and scoring protein complexes: CAPRI 3rd edition
Marc F. Lensink et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
Toward realistic modeling of dynamic processes in cell signaling: Quantification of macromolecular crowding effects
Jian Sun et al.
JOURNAL OF CHEMICAL PHYSICS (2007)
In-cell NMR spectroscopy
Sina Reckel et al.
PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY (2007)
The structure of bacterial ParM filaments
Albina Orlova et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2007)
Protein-protein association in polymer solutions: From dilute to semidilute to concentrated
Noga Kozer et al.
BIOPHYSICAL JOURNAL (2007)
A biological interpretation of transient anomalous subdiffusion. I. Qualitative model
Michael J. Saxton
BIOPHYSICAL JOURNAL (2007)
Translational and rotational motions of proteins in a protein crowded environment
Silvia Zorrilla et al.
BIOPHYSICAL CHEMISTRY (2007)
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
Peng Lu et al.
NATURE BIOTECHNOLOGY (2007)
From the test tube to the cell: Exploring the floding and aggregation of a beta-clam protein
Zoya Ignatova et al.
BIOPOLYMERS (2007)
Atomically detailed simulations of concentrated protein solutions: The effects of salt, pH, point mutations, and protein concentration in simulations of 1000-molecule systems
Sean R. McGuffee et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2006)
Crowding and confinement effects on protein diffusion in vivo
Michael C. Konopka et al.
JOURNAL OF BACTERIOLOGY (2006)
SABBAC:: online structural alphabet-based protein backbone reconstruction from alpha-carbon trace
Julien Maupetit et al.
NUCLEIC ACIDS RESEARCH (2006)
Molecular Simulations of cotranslational protein folding: Fragment stabilities, folding cooperativity, and trapping in the ribosome
Adrian H. Elcock
PLOS COMPUTATIONAL BIOLOGY (2006)
Diffusion of green fluorescent protein in three cell environments in Escherichia coli
Conrad W. Mullineaux et al.
JOURNAL OF BACTERIOLOGY (2006)
Physical nature of bacterial cytoplasm
I Golding et al.
PHYSICAL REVIEW LETTERS (2006)
Very fast empirical prediction and rationalization of protein pKa values
H Li et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
Separating the contribution of translational and rotational diffusion to protein association
YY Kuttner et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2005)
Anomalous diffusion of proteins due to molecular crowding
DS Banks et al.
BIOPHYSICAL JOURNAL (2005)
Statistical coil model of the unfolded state: Resolving the reconciliation problem
AK Jha et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Amyloid-like fibrils of ribonuclease A with three-dimensional domain-swapped and native-like structure
S Sambashivan et al.
NATURE (2005)
Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth
A Lopez-Campistrous et al.
MOLECULAR & CELLULAR PROTEOMICS (2005)
Molecular crowding enhances native state stability and refolding rates of globular proteins
MS Cheung et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Models for excluded volume interaction between an unfolded protein and rigid macromolecular cosolutes: Macromolecular crowding and protein stability revisited
AP Minton
BIOPHYSICAL JOURNAL (2005)
On the salt-induced stabilization of pair and many-body hydrophobic interactions
T Ghosh et al.
JOURNAL OF PHYSICAL CHEMISTRY B (2005)
Rapid estimation of solvation energy for simulations of protein-protein association
DS Cerutti et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2005)
Protein self-association in crowded protein solutions:: A time-resolved fluorescence polarization study
S Zorrilla et al.
PROTEIN SCIENCE (2004)
Monitoring protein stability and aggregation in vivo by real-time fluorescent labeling
Z Ignatova et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Nonstationary rotational diffusion in room temperature liquids measured by femtosecond three-pulse transient anisotropy
KM Gaab et al.
PHYSICAL REVIEW LETTERS (2004)
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
TJ Dolinsky et al.
NUCLEIC ACIDS RESEARCH (2004)
Dynamic instability in a DNA-segregating prokaryotic actin homolog
EC Garner et al.
SCIENCE (2004)
Anomalous subdiffusion is a measure for cytoplasmic crowding in living cells
M Weiss et al.
BIOPHYSICAL JOURNAL (2004)
The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli
S Sundararaj et al.
NUCLEIC ACIDS RESEARCH (2004)
A graph-theory algorithm for rapid protein side-chain prediction
AA Canutescu et al.
PROTEIN SCIENCE (2003)
SWISS-MODEL: an automated protein homology-modeling server
T Schwede et al.
NUCLEIC ACIDS RESEARCH (2003)
Molecular dynamics simulation of the SH3 domain aggregation suggests a generic amyloidogenesis mechanism
F Ding et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
The Poisson-Boltzmann equation for biomolecular electrostatics: a tool for structural biology
F Fogolari et al.
JOURNAL OF MOLECULAR RECOGNITION (2002)
Evaluating conformational free energies: The colony energy and its application to the problem of loop prediction
ZX Xiang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
Quantitative protein stability measurement in vivo
S Ghaemmaghami et al.
NATURE STRUCTURAL BIOLOGY (2001)
Electrostatics of nanosystems: Application to microtubules and the ribosome
NA Baker et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Thermodynamics and kinetics of actin filament nucleation
D Sept et al.
BIOPHYSICAL JOURNAL (2001)
Identification of protein oligomerization states by analysis of interface conservation
AH Elcock et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Calculation of weak protein-protein interactions: The pH dependence of the second virial coefficient
AH Elcock et al.
BIOPHYSICAL JOURNAL (2001)
Computational challenges in simulating large DNA over long times
T Schlick et al.
COMPUTING IN SCIENCE & ENGINEERING (2000)
Topological and energetic factors: What determines the structural details of the transition state ensemble and en-route intermediates for protein folding? An investigation for small globular proteins
C Clementi et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
Kinetics of desolvation-mediated protein-protein binding
CJ Camacho et al.
BIOPHYSICAL JOURNAL (2000)
Calculation of hydrodynamic properties of globular proteins from their atomic-level structure
JG de la Torre et al.
BIOPHYSICAL JOURNAL (2000)
The Protein Data Bank
HM Berman et al.
NUCLEIC ACIDS RESEARCH (2000)