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Patrick F. Suthers et al.
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Natalie C. Duarte et al.
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A model for protein translation: Polysome self-organization leads to maximum protein synthesis rates
Hermioni Zouridis et al.
BIOPHYSICAL JOURNAL (2007)
Systems approach to refining genome annotation
Jennifer L. Reed et al.
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Matrix formalism to describe functional states of transcriptional regulatory systems
Erwin P. Gianchandani et al.
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A computational framework for the topological analysis and targeted disruption of signal transduction networks
Madhukar S. Dasika et al.
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Large-scale identification of protein-protein interaction of Escherichia coli K-12
M Arifuzzaman et al.
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Metabolite coupling in genome-scale metabolic networks
SA Becker et al.
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Towards multidimensional genome annotation
JL Reed et al.
NATURE REVIEWS GENETICS (2006)
An algorithmic framework for genome-wide modeling and analysis of translation networks
A Mehra et al.
BIOPHYSICAL JOURNAL (2006)
Escherichia coli K-12: a cooperatively developed annotation snapshot - 2005
M Riley et al.
NUCLEIC ACIDS RESEARCH (2006)
Metabolic functions of duplicate genes in Saccharomyces cerevisiae
L Kuepfer et al.
GENOME RESEARCH (2005)
Expanded metabolic reconstruction of Helicobacter pylori (iIT341 GSM/GPR):: an in silico genome-scale characterization of single- and double-deletion mutants
I Thiele et al.
JOURNAL OF BACTERIOLOGY (2005)
Proteome-wide analysis of chaperonin-dependent protein folding in Escherichia coli
MJ Kerner et al.
CELL (2005)
Candidate metabolic network states in human mitochondria
I Thiele et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2005)
Interaction network containing conserved and essential protein complexes in Escherichia coli
G Butland et al.
NATURE (2005)
Reconstruction of cellular signalling networks and analysis of their properties
JA Papin et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2005)
Compilation of tRNA sequences and sequences of tRNA genes
M Sprinzl et al.
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Global organization of metabolic fluxes in the bacterium Escherichia coli
E Almaas et al.
NATURE (2004)
Flux coupling analysis of genome-scale metabolic network reconstructions
AP Burgard et al.
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Metabolic gene-deletion strains of Escherichia coli evolve to computationally predicted growth phenotypes
SS Fong et al.
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Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model
NC Duarte et al.
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Life history implications of rRNA gene copy number in Escherichia coli
BS Stevenson et al.
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The CyberCell Database (CCDB): a comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli
S Sundararaj et al.
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The KEGG resource for deciphering the genome
M Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2004)
Genome-scale models of microbial cells: Evaluating the consequences of constraints
ND Price et al.
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Integrating high-throughput and computational data elucidates bacterial networks
MW Covert et al.
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Insights into the relation between mRNA and protein expression patterns: I. Theoretical considerations
A Mehra et al.
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The effects of alternate optimal solutions in constraint-based genome-scale metabolic models
R Mahadevan et al.
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Genome-scale microbial in silico models:: the constraints-based approach
ND Price et al.
TRENDS IN BIOTECHNOLOGY (2003)
Trigger Factor and DnaK possess overlapping substrate pools and binding specificities
E Deuerling et al.
MOLECULAR MICROBIOLOGY (2003)
Sequence-based analysis of metabolic demands for protein synthesis in prokaryotes
TE Allen et al.
JOURNAL OF THEORETICAL BIOLOGY (2003)
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
JA Bernstein et al.
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Metabolic modelling of microbes: the flux-balance approach
JS Edwards et al.
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The Escherichia coli MG1655 in silico metabolic genotype:: Its definition, characteristics, and capabilities
JS Edwards et al.
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