相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Amino acid network and its scoring application in protein-protein docking
Shan Chang et al.
BIOPHYSICAL CHEMISTRY (2008)
Hydrogen bonds in protein-DNA complexes: Where geometry meets plasticity
Stavroula A. Coulocheri et al.
BIOCHIMIE (2007)
Screened nonbonded interactions in native proteins manipulate optimal paths for robust residue communication
Ali Rana Atilgan et al.
BIOPHYSICAL JOURNAL (2007)
Role of aromatic amino acids in protein-nucleic acid recognition
Christopher M. Baker et al.
BIOPOLYMERS (2007)
Classification of protein-DNA complexes based on structural descriptors
Ponraj Prabakaran et al.
STRUCTURE (2006)
ReadOut:: structure-based calculation of direct and indirect readout energies and specificities for protein-DNA recognition
Shandar Ahmad et al.
NUCLEIC ACIDS RESEARCH (2006)
Chromatin architecture
CL Woodcock
CURRENT OPINION IN STRUCTURAL BIOLOGY (2006)
Correlation of the side-chain hubs with the functional residues in DNA binding protein structures
R Sathyapriya et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2006)
Role of inter and intramolecular interactions in protein-DNA recognition
MM Gromiha et al.
GENE (2005)
A network representation of protein structures: Implications for protein stability
KV Brinda et al.
BIOPHYSICAL JOURNAL (2005)
Protein-nucleic acid recognition: Statistical analysis of atomic interactions and influence of DNA structure
D Lejeune et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
Small-world network approach to identify key residues in protein-protein interaction
A del Sol et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
Structural alignment of protein-DNA interfaces: Insights into the determinants of binding specificity
TW Siggers et al.
JOURNAL OF MOLECULAR BIOLOGY (2005)
Intermolecular and intramolecular readout mechanisms in protein-DNA recognition
MM Gromiha et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
Molecular recognition of the nucleosomal supergroove
RS Edayathumangalam et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Using electrostatic potentials to predict DNA-binding sites on DNA-binding proteins
S Jones et al.
NUCLEIC ACIDS RESEARCH (2003)
Uncovering network systems within protein structures
LH Greene et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
Protein-DNA interactions: Amino acid conservation and the effects of mutations on binding specificity
NM Luscombe et al.
JOURNAL OF MOLECULAR BIOLOGY (2002)
Analysis of homodimeric protein interfaces by graph-spectral methods
KV Brinda et al.
PROTEIN ENGINEERING (2002)
A regulated two-step mechanism of TBP binding to DNA: A solvent-exposed surface of TBP inhibits TATA box recognition
XM Zhao et al.
CELL (2002)
Amino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic level
NM Luscombe et al.
NUCLEIC ACIDS RESEARCH (2001)
Three key residues form a critical contact network in a protein folding transition state
M Vendruscolo et al.
NATURE (2001)
Backbone cluster identification in proteins by a graph theoretical method
SM Patra et al.
BIOPHYSICAL CHEMISTRY (2000)
The Protein Data Bank
HM Berman et al.
NUCLEIC ACIDS RESEARCH (2000)