相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes
Sushim Kumar Gupta et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2014)
In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
Alessandra Carattoli et al.
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY (2014)
Deriving Group A Streptococcus Typing Information from Short-Read Whole-Genome Sequencing Data
Taryn B. T. Athey et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2014)
Live Genomics for Pathogen Monitoring in Public Health
Giuseppe D'Auria et al.
PATHOGENS (2014)
Rapid bacterial genome sequencing: methods and applications in clinical microbiology
C. Bertelli et al.
CLINICAL MICROBIOLOGY AND INFECTION (2013)
A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic
Matthew T. G. Holden et al.
GENOME RESEARCH (2013)
Real-Time Genomic Epidemiological Evaluation of Human Campylobacter Isolates by Use of Whole-Genome Multilocus Sequence Typing
Alison J. Cody et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2013)
Outbreak Investigation Using High-Throughput Genome Sequencing within a Diagnostic Microbiology Laboratory
Norelle L. Sherry et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2013)
Whole genome sequencing in the prevention and control of Staphylococcus aureus infection
J. R. Price et al.
JOURNAL OF HOSPITAL INFECTION (2013)
Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study
Simon R. Harris et al.
LANCET INFECTIOUS DISEASES (2013)
Public Health Genomics and the New Molecular Epidemiology of Bacterial Pathogens
M. W. Gilmour et al.
PUBLIC HEALTH GENOMICS (2013)
Genomic Insights to Control the Emergence of Vancomycin-Resistant Enterococci
Benjamin P. Howden et al.
MBIO (2013)
Rapid Bacterial Whole-Genome Sequencing to Enhance Diagnostic and Public Health Microbiology
Sandra Reuter et al.
JAMA INTERNAL MEDICINE (2013)
GAGE: A critical evaluation of genome assemblies and assembly algorithms
Steven L. Salzberg et al.
GENOME RESEARCH (2012)
Rapid whole-genome sequencing of bacterial pathogens in the clinical microbiology laboratorypipe dream or reality?
M. E. Toeroek et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2012)
Identification of acquired antimicrobial resistance genes
Ea Zankari et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2012)
Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria
Mette V. Larsen et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2012)
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
Anton Bankevich et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2012)
Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa
Chinyere K. Okoro et al.
NATURE GENETICS (2012)
Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe
Kathryn E. Holt et al.
NATURE GENETICS (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Transforming clinical microbiology with bacterial genome sequencing
Xavier Didelot et al.
NATURE REVIEWS GENETICS (2012)
High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity
Nicholas J. Loman et al.
NATURE REVIEWS MICROBIOLOGY (2012)
Open-Source Genomic Analysis of Shiga-Toxin-Producing E. coli O104:H4
Holger Rohde et al.
NEW ENGLAND JOURNAL OF MEDICINE (2011)
Rapid Pneumococcal Evolution in Response to Clinical Interventions
Nicholas J. Croucher et al.
SCIENCE (2011)
High-throughput sequencing and clinical microbiology: progress, opportunities and challenges
Mark J. Pallen et al.
CURRENT OPINION IN MICROBIOLOGY (2010)
Coalescent Simulation of Intracodon Recombination
Miguel Arenas et al.
GENETICS (2010)
A Sustained Hospital Outbreak of Vancomycin-Resistant Enterococcus faecium Bacteremia due to Emergence of vanB E. faecium Sequence Type 203
Paul D. R. Johnson et al.
JOURNAL OF INFECTIOUS DISEASES (2010)
Bacterial population genomics and infectious disease diagnostics
Sandeep J. Joseph et al.
TRENDS IN BIOTECHNOLOGY (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Weizhong Li et al.
BIOINFORMATICS (2006)
Identification of plasmids by PCR-based replicon typing
A Carattoli et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2005)
How clonal is Staphylococcus aureus?
EJ Feil et al.
JOURNAL OF BACTERIOLOGY (2003)
Enterococcal vanB resistance locus in anaerobic bacteria in human faeces
TP Stinear et al.
LANCET (2001)
分享论文
