期刊
STANDARDS IN GENOMIC SCIENCES
卷 6, 期 3, 页码 336-345出版社
BMC
DOI: 10.4056/sigs.2645906
关键词
Pyrobaculum oguniense; Pyrobaculum arsenaticum; Crenarchaea; inversion
资金
- National Science Foundation [DBI-0641061]
- Graduate Research and Education in Adaptive Bio-Technology (GREAT) Training Program
- University of California Biotechnology Research and Education Program
Pyrobaculum oguniense TE7 is an aerobic hyperthermophilic crenarchaeon isolated from a hot spring in Japan. Here we describe its main chromosome of 2,436,033 bp, with three large-scale inversions and an extra-chromosomal element of 16,887 bp. We have annotated 2,800 protein-coding genes and 145 RNA genes in this genome, including nine H/ACA-like small RNA, 83 predicted C/D box small RNA, and 47 transfer RNA genes. Comparative analyses with the closest known relative, the anaerobe Pyrobaculum arsenaticum from Italy, reveals unexpectedly high synteny and nucleotide identity between these two geographically distant species. Deep sequencing of a mixture of genomic DNA from multiple cells has illuminated some of the genome dynamics potentially shared with other species in this genus.
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