3.9 Article

Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21(T))

期刊

STANDARDS IN GENOMIC SCIENCES
卷 5, 期 1, 页码 97-111

出版社

GENOMIC STAND CONSORT
DOI: 10.4056/sigs.2114901

关键词

aerobic; heterotrophic; filamentous; non-motile; Gram-positive; moderately acidophilic; sporulating; transposon; broken-stick distribution; entropy; Ktedonobacteraceae; Chloroflexi; GEBA

资金

  1. US Department of Energy's Office of Science, Biological and Environmental Research
  2. University of California, Lawrence Berkeley National Laboratory [DE-AC02-05CH11231]
  3. Lawrence Livermore National Laboratory [DE-AC52-07NA27344]
  4. Los Alamos National Laboratory [DE-AC02-06NA25396]
  5. UT-Battelle and Oak Ridge National Laboratory [DE-AC05-00OR22725]
  6. German Research Foundation (DFG) [INST 599/1-1]

向作者/读者索取更多资源

Ktedonobacter racemifer corrig. Cavaletti et al. 2007 is the type species of the genus Ktedonobacter, which in turn is the type genus of the family Ktedonobacteraceae, the type family of the order Ktedonobacterales within the class Ktedonobacteria in the phylum 'Chloroflexi'. Although K. racemifer shares some morphological features with the actinobacteria, it is of special interest because it was the first cultivated representative of a deep branching unclassified lineage of otherwise uncultivated environmental phylotypes tentatively located within the phylum 'Chloroflexi'. The aerobic, filamentous, non-motile, spore-forming Gram-positive heterotroph was isolated from soil in Italy. The 13,661,586 bp long non-contiguous finished genome consists of ten contigs and is the first reported genome sequence from a member of the class Ktedonobacteria. With its 11,453 protein-coding and 87 RNA genes, it is the largest prokaryotic genome reported so far. It comprises a large number of over-represented COGs, particularly genes associated with transposons, causing the genetic redundancy within the genome being considerably larger than expected by chance. This work is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

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