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Robert D. Finn et al.
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Zefeng Yang et al.
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Bjorn Nystedt et al.
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Sony Malhotra et al.
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Origin of land plants using the multispecies coalescent model
Bojian Zhong et al.
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Jipei Yue et al.
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Horizontal gene transfer in fungi
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Dae Yeon Kim et al.
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Phytozome: a comparative platform for green plant genomics
David M. Goodstein et al.
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The Vitis vinifera C-repeat binding protein 4 (VvCBF4) transcriptional factor enhances freezing tolerance in wine grape
Richard L. Tillett et al.
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Morphological evolution in land plants: new designs with old genes
Nuno D. Pires et al.
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Widespread impact of horizontal gene transfer on plant colonization of land
Jipei Yue et al.
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The Function of Introns
Michal Chorev et al.
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The Vein Patterning 1 (VEP1) Gene Family Laterally Spread through an Ecological Network
Rosa Tarrio et al.
PLOS ONE (2011)
Horizontal gene transfer between bacteria and animals
Julie C. Dunning Hotopp
TRENDS IN GENETICS (2011)
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Junjie Fu et al.
BMC PLANT BIOLOGY (2010)
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Cedric Finet et al.
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Stephane Guindon et al.
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S. G. Chankova et al.
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PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
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Base-excision repair of oxidative DNA damage
Sheila S. David et al.
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The deepest divergences in land plants inferred from phylogenomic evidence
Yin-Long Qiu et al.
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PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments
Mikita Suyama et al.
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Assessment of methods for amino acid matrix selection and their use on empirical data shows that ad hoc assumptions for choice of matrix are not justified
TM Keane et al.
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Toward automatic reconstruction of a highly resolved tree of life
FD Ciccarelli et al.
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Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level
JZ Zhang et al.
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DNA repair mechanisms in plants: crucial sensors and effectors for the maintenance of genome integrity
CM Bray et al.
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The signature of positive selection on standing genetic variation
M Przeworski et al.
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Monophyly of primary photosynthetic eukaryotes:: Green plants, red algae, and glaucophytes
N Rodríguez-Ezpeleta et al.
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Bayes empirical Bayes inference of amino acid sites under positive selection
ZH Yang et al.
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Horizontal gene transfer, genome innovation and evolution
JP Gogarten et al.
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WSW Wong et al.
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Green algae and the origin of land plants
LA Lewis et al.
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Multiple sequence alignment with the Clustal series of programs
R Chenna et al.
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How introns influence and enhance eukaryotic gene expression
H Le Hir et al.
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ER Waters
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Oxidative demethylation by Escherichia coli AlkB directly reverts DNA base damage
SC Trewick et al.
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Active-site clashes prevent the human 3-methyladenine DNA glycosylase from improperly removing bases
EE Connor et al.
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KJ Livak et al.
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H Ochman et al.
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The origin of red algae and the evolution of chloroplasts
D Moreira et al.
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F de la Cruz et al.
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