4.7 Article

Benchmarking of RNA-sequencing analysis workflows using wholetranscriptome RT-qPCR expression data

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Salmon provides fast and bias-aware quantification of transcript expression

Rob Patro et al.

NATURE METHODS (2017)

Article Biotechnology & Applied Microbiology

Near-optimal probabilistic RNA-seq quantification

Nicolas L. Bray et al.

NATURE BIOTECHNOLOGY (2016)

Correction Biotechnology & Applied Microbiology

A benchmark for RNA-seq quantification pipelines (vol 17, 74, 2016)

Mingxiang Teng et al.

GENOME BIOLOGY (2016)

Article Biochemistry & Molecular Biology

limma powers differential expression analyses for RNA-sequencing and microarray studies

Matthew E. Ritchie et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Multidisciplinary Sciences

Efficient Test and Visualization of Multi-Set Intersections

Minghui Wang et al.

SCIENTIFIC REPORTS (2015)

Article Biochemical Research Methods

HTSeq-a Python framework to work with high-throughput sequencing data

Simon Anders et al.

BIOINFORMATICS (2015)

Article Biotechnology & Applied Microbiology

Errors in RNA-Seq quantification affect genes of relevance to human disease

Christelle Robert et al.

GENOME BIOLOGY (2015)

Article Biotechnology & Applied Microbiology

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

Rob Patro et al.

NATURE BIOTECHNOLOGY (2014)

Article Biochemical Research Methods

Evaluation of quantitative miRNA expression platforms in the microRNA quality control (miRQC) study

Pieter Mestdagh et al.

NATURE METHODS (2014)

Article Biotechnology & Applied Microbiology

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

Michael I. Love et al.

GENOME BIOLOGY (2014)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Biochemical Research Methods

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Cole Trapnell et al.

NATURE PROTOCOLS (2012)

Article Biochemical Research Methods

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell et al.

BIOINFORMATICS (2009)

Article Biotechnology & Applied Microbiology

A novel and universal method for microRNA RT-qPCR data normalization

Pieter Mestdagh et al.

GENOME BIOLOGY (2009)

Article Biochemical Research Methods

Mapping and quantifying mammalian transcriptomes by RNA-Seq

Ali Mortazavi et al.

NATURE METHODS (2008)

Article Biochemical Research Methods

In situ analysis of cross-hybridisation on microarrays and the inference of expression correlation

Tineke Casneuf et al.

BMC BIOINFORMATICS (2007)

Article Biochemical Research Methods

Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations

Michal J. Okoniewski et al.

BMC BIOINFORMATICS (2006)