相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。KEGG as a reference resource for gene and protein annotation
Minoru Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2016)
Incompatibility between Nuclear and Mitochondrial Genomes Contributes to an Interspecies Reproductive Barrier
Hong Ma et al.
CELL METABOLISM (2016)
TransRate: reference-free quality assessment of de novo transcriptome assemblies
Richard Smith-Unna et al.
GENOME RESEARCH (2016)
The Tangled Evolutionary Legacies of Range Expansion and Hybridization
Daniele Canestrelli et al.
TRENDS IN ECOLOGY & EVOLUTION (2016)
Negligible nuclear introgression despite complete mitochondrial capture between two species of chipmunks
Jeffrey M. Good et al.
EVOLUTION (2015)
Range dynamics driven by Quaternary climate oscillations explain the distribution of introgressed mtDNA ofLepus timidus origin in hares from the Iberian Peninsula
Pelayo Acevedo et al.
JOURNAL OF BIOGEOGRAPHY (2015)
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
The Elusive Nature of Adaptive Mitochondrial DNA Evolution of an Arctic Lineage Prone to Frequent Introgression
Jose Melo-Ferreira et al.
GENOME BIOLOGY AND EVOLUTION (2014)
Home-loving boreal hare mitochondria survived several invasions in Iberia: the relative roles of recurrent hybridisation and allele surfing
J. Melo-Ferreira et al.
HEREDITY (2014)
Contemporary ecotypic divergence during a recent range expansion was facilitated by adaptive introgression
K. Lucek et al.
JOURNAL OF EVOLUTIONARY BIOLOGY (2014)
Evaluation of demographic history and neutral parameterization on the performance of FST outlier tests
Katie E. Lotterhos et al.
MOLECULAR ECOLOGY (2014)
Deep Evolutionary Comparison of Gene Expression Identifies Parallel Recruitment of Trans-Factors in Two Independent Origins of C4 Photosynthesis
Sylvain Aubry et al.
PLOS GENETICS (2014)
DETECTING RANGE EXPANSIONS FROM GENETIC DATA
Benjamin M. Peter et al.
EVOLUTION (2013)
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Brian J. Haas et al.
NATURE PROTOCOLS (2013)
Reference-Free Population Genomics from Next-Generation Transcriptome Data and the Vertebrate-Invertebrate Gap
Philippe Gayral et al.
PLOS GENETICS (2013)
The Population Genomics of a Fast Evolver: High Levels of Diversity, Functional Constraint, and Molecular Adaptation in the Tunicate Ciona intestinalis
Georgia Tsagkogeorga et al.
GENOME BIOLOGY AND EVOLUTION (2012)
The biogeography of mitochondrial and nuclear discordance in animals
David P. L. Toews et al.
MOLECULAR ECOLOGY (2012)
Reference-free transcriptome assembly in non-model animals from next-generation sequencing data
V. Cahais et al.
MOLECULAR ECOLOGY RESOURCES (2012)
Past, Present and Future Distributions of an Iberian Endemic, Lepus granatensis: Ecological and Evolutionary Clues from Species Distribution Models
Pelayo Acevedo et al.
PLOS ONE (2012)
Recurrent Introgression of Mitochondrial DNA Among Hares (Lepus spp.) Revealed by Species-Tree Inference and Coalescent Simulations
J. Melo-Ferreira et al.
SYSTEMATIC BIOLOGY (2012)
STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
Dent A. Earl et al.
CONSERVATION GENETICS RESOURCES (2012)
Sim4db and Leaff: utilities for fast batch spliced alignment and sequence indexing
Brian Walenz et al.
BIOINFORMATICS (2011)
InterMitoBase: An annotated database and analysis platform of protein-protein interactions for human mitochondria
Zuguang Gu et al.
BMC GENOMICS (2011)
INTERSPECIFIC X-CHROMOSOME AND MITOCHONDRIAL DNA INTROGRESSION IN THE IBERIAN HARE: SELECTION OR ALLELE SURFING?
Jose Melo-Ferreira et al.
EVOLUTION (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
SPECIATION IN THE EUROPEAN RABBIT (ORYCTOLAGUS CUNICULUS): ISLANDS OF DIFFERENTIATION ON THE X CHROMOSOME AND AUTOSOMES
Miguel Carneiro et al.
EVOLUTION (2010)
Using Environmental Correlations to Identify Loci Underlying Local Adaptation
Graham Coop et al.
GENETICS (2010)
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
Laurent Excoffier et al.
MOLECULAR ECOLOGY RESOURCES (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
The genomic legacy from the extinct Lepus timidus to the three hare species of Iberia: contrast between mtDNA, sex chromosomes and autosomes
J. Melo-Ferreira et al.
MOLECULAR ECOLOGY (2009)
A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective
Matthieu Foll et al.
GENETICS (2008)
CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
Mattias Jakobsson et al.
BIOINFORMATICS (2007)
The rise and fall of the mountain hare (Lepus timidus) during Pleistocene glaciations:: expansion and retreat with hybridization in the Iberian Peninsula
J. Melo-Ferreira et al.
MOLECULAR ECOLOGY (2007)
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
Kim D. Pruitt et al.
NUCLEIC ACIDS RESEARCH (2007)
Principal components analysis corrects for stratification in genome-wide association studies
Alkes L. Price et al.
NATURE GENETICS (2006)
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Weizhong Li et al.
BIOINFORMATICS (2006)
Blast2GO:: a universal tool for annotation, visualization and analysis in functional genomics research
A Conesa et al.
BIOINFORMATICS (2005)
InterProScan: protein domains identifier
E Quevillon et al.
NUCLEIC ACIDS RESEARCH (2005)
Invasion from the cold past:: extensive introgression of mountain hare (Lepus timidus) mitochondrial DNA into three other hare species in northern Iberia
J Melo-Ferreira et al.
MOLECULAR ECOLOGY (2005)
Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study
G Evanno et al.
MOLECULAR ECOLOGY (2005)
Hybridization as an invasion of the genome
J Mallet
TRENDS IN ECOLOGY & EVOLUTION (2005)
DISTRUCT: a program for the graphical display of population structure
NA Rosenberg
MOLECULAR ECOLOGY NOTES (2004)
Genetic consequences of climatic oscillations in the Quaternary
GM Hewitt
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2004)
Surviving the ice: Northern refugia and postglacial colonization
KC Rowe et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
KEGG: Kyoto Encyclopedia of Genes and Genomes
M Kanehisa et al.
NUCLEIC ACIDS RESEARCH (2000)
分享论文
