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Milton H. Saier et al.
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Lin-xing Chen et al.
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IslandViewer 3: more flexible, interactive genomic island discovery, visualization and analysis
Bhavjinder K. Dhillon et al.
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Maria S. Muntyan et al.
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Celia Mendez-Garcia et al.
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IMG 4 version of the integrated microbial genomes comparative analysis system
Victor M. Markowitz et al.
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MEROPS: the database of proteolytic enzymes, their substrates and inhibitors
Neil D. Rawlings et al.
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Alexis P. Yelton et al.
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MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
Koichiro Tamura et al.
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Rfam 11.0: 10 years of RNA families
Sarah W. Burge et al.
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Nicholas B. Justice et al.
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Andrey R. Pavlov et al.
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The superfamily of heme-copper oxygen reductases: Types and evolutionary considerations
Filipa L. Sousa et al.
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Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer
Yuri I. Wolf et al.
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Genomic insights into microbial iron oxidation and iron uptake strategies in extremely acidic environments
Violaine Bonnefoy et al.
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Community genomic analysis of an extremely acidophilic sulfur-oxidizing biofilm
Daniel S. Jones et al.
ISME JOURNAL (2012)
Diversity, assembly and regulation of archaeal type IV pili-like and non-type-IV pili-like surface structures
Kerstin Lassak et al.
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Olga V. Golyshina
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
Terminal Oxidase Diversity and Function in Metallosphaera yellowstonensis: Gene Expression and Protein Modeling Suggest Mechanisms of Fe(II) Oxidation in the Sulfolobales
M. A. Kozubal et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
The cytochrome bd respiratory oxygen reductases
Vitaliy B. Borisov et al.
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Mobilisation and remobilisation of a large archetypal pathogenicity island of uropathogenic Escherichia coli in vitro support the role of conjugation for horizontal transfer of genomic islands
Gyoergy Schneider et al.
BMC MICROBIOLOGY (2011)
Archaeal diversity in a terrestrial acidic spring field revealed by a novel PCR primer targeting archaeal 16S rRNA genes
Shingo Kato et al.
FEMS MICROBIOLOGY LETTERS (2011)
The Sequence Read Archive
Rasko Leinonen et al.
NUCLEIC ACIDS RESEARCH (2011)
A Bioinformatics Classifier and Database for Heme-Copper Oxygen Reductases
Filipa L. Sousa et al.
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Ecological distribution and population physiology defined by proteomics in a natural microbial community
Ryan S. Mueller et al.
MOLECULAR SYSTEMS BIOLOGY (2010)
Infernal 1.0: inference of RNA alignments
Eric P. Nawrocki et al.
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Comprehensive comparative-genomic analysis of Type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes
Kira S. Makarova et al.
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Acidiplasma aeolicum gen. nov., sp nov., a euryarchaeon of the family Ferroplasmaceae isolated from a hydrothermal pool, and transfer of Ferroplasma cupricumulans to Acidiplasma cupricumulans comb. nov.
Olga V. Golyshina et al.
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An Anaerobic-Type α-Ketoglutarate Ferredoxin Oxidoreductase Completes the Oxidative Tricarboxylic Acid Cycle of Mycobacterium tuberculosis
Anthony D. Baughn et al.
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Community-wide analysis of microbial genome sequence signatures
Gregory J. Dick et al.
GENOME BIOLOGY (2009)
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
F. Meyer et al.
BMC BIOINFORMATICS (2008)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
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Virus population dynamics and acquired virus resistance in natural microbial communities
Anders F. Andersson et al.
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A minimal tat system from a gram-positive organism - A bifunctional TatA subunit participates in discrete TatAC and TatA complexes
James P. Barnett et al.
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Phylogenomics of the archaeal flagellum: rare horizontal gene transfer in a unique motility structure
Elie Desmond et al.
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DNA-DNA hybridization values and their relationship to whole-genome sequence similarities
Johan Goris et al.
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Community structure and metabolism through reconstruction of microbial genomes from the environment
GW Tyson et al.
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Genome sequence of Picrophilus torridus and its implications for life around pH 0
O Fütterer et al.
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BJ Baker et al.
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MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
K Katoh et al.
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ReIE, a global inhibitor of translation, is activated during nutritional stress
SK Christensen et al.
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Ferroplasma acidiphilum gen. nov., sp nov., an acidophilic, autotrophic, ferrous-iron-oxidizing, cell-wall-lacking, mesophilic member of the Ferroplasmaceae fam. nov., comprising a distinct lineage of the Archaea
OV Golyshina et al.
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